View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_4 (Length: 539)
Name: NF16791_low_4
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 262 - 523
Target Start/End: Complemental strand, 40482400 - 40482140
Alignment:
| Q |
262 |
gtaacaaaatatcaaatttgaggtcattgacttacaagtgtcgtgtgagctagagtcaagcaactattgaacgaactacctccgttgatgccatttctat |
361 |
Q |
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| T |
40482400 |
gtaacaaaatatcaaatttgagatcattgacttacaagtgtcgtgtgagctagagtcaagcaactattgaacgaactacctccgttgatgccatttctat |
40482301 |
T |
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| Q |
362 |
aatttaagaaccttttttgttcttnnnnnnnnnncattttttgttgattttattagtttagggattaaattgatgaaaatgtgatagtttaaagacaaat |
461 |
Q |
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| T |
40482300 |
aatttaagaaccttttttgttcttaagaaaaaa-cattttttgttgattttattagtttagggattaaattgatgaaaatgtgatagtttaaagacaaat |
40482202 |
T |
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| Q |
462 |
tgattgtataagcaatgagtcgggtggggtttcaaaacttcaagtcatgattagtcactttt |
523 |
Q |
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| T |
40482201 |
tgattgtataagcaatgactcgggtggggtttcaaaacttcaagtcatgattagccactttt |
40482140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 40482694 - 40482502
Alignment:
| Q |
9 |
gaaatgaagtttcattcatgggttccaatttaggtgatcaggtctgaaagtaacgataaaagtataaccacaaaaatgcattgagtatattttgtactgt |
108 |
Q |
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| T |
40482694 |
gaaatgaagtttcattcatgggttccaatttaggtgatcaggtctgagagtaacgataaaagtataaccacaaaaatacattgagtatattttgtactgt |
40482595 |
T |
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| Q |
109 |
ggatagtgtggaaggtattacaatacaaattacaaacgaccactttacttcacacatgatatatttcttggaaggtgcttggggttaaatact |
201 |
Q |
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| T |
40482594 |
ggatagtgtggaaggtattacaatacaaattacaaacgaccactttacttcacacatgatatatttcttggaaggtgcttggggttaaatact |
40482502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 40492913 - 40492783
Alignment:
| Q |
211 |
atacttaattagttttatgttttcgtaac---ttttatattggataaattcatagtaacaaaatatcaaattt-gaggtcattgacttacaagtgtcgtg |
306 |
Q |
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| T |
40492913 |
atacttaattcgttttatgttttcttaaaattttttatattggatgaattcagtgtaataaaatatcaaattttgacatcgtagacttacaagtgtcgtg |
40492814 |
T |
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| Q |
307 |
tgagctagagtcaagcaactattgaacgaac |
337 |
Q |
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| T |
40492813 |
tgagctagagtcaagcaactattgaacgaac |
40492783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 40482437 - 40482396
Alignment:
| Q |
198 |
tactattttttacatacttaattagttttatgttttcgtaac |
239 |
Q |
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| T |
40482437 |
tactattttttacatacttaattagttttatgttttcgtaac |
40482396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 514
Target Start/End: Complemental strand, 40492699 - 40492590
Alignment:
| Q |
409 |
ttttattagtttagggattaaattgatgaaaatgtga---tagtttaaagacaaattga-ttgtataagcaatgagtcgggtggggtttcaaaacttcaa |
504 |
Q |
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| T |
40492699 |
ttttattagtttatggattaaattgatcaaagtgtgatagtagtttaaagacaaattgatttgtataagcaattattcaactgcaggttcaaaacttcaa |
40492600 |
T |
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| Q |
505 |
gtcatgatta |
514 |
Q |
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| T |
40492599 |
gttatgatta |
40492590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 40492752 - 40492708
Alignment:
| Q |
338 |
tacctccgttgatgccatttctataatttaagaaccttttttgtt |
382 |
Q |
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| T |
40492752 |
taccaccgttgatgcaatttctataattgaagaaccttttttgtt |
40492708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 40494102 - 40494070
Alignment:
| Q |
119 |
gaaggtattacaatacaaattacaaacgaccac |
151 |
Q |
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| T |
40494102 |
gaaggtattacaatacaaattacaaacgaccac |
40494070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 14403311 - 14403259
Alignment:
| Q |
398 |
ttttttgttgattttattagtttagggattaaattgatgaaaatgtgatagtt |
450 |
Q |
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| T |
14403311 |
tttttagttgattttattagtttaaggacgaaattgatgaaatggtgatagtt |
14403259 |
T |
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