View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_5 (Length: 522)
Name: NF16791_low_5
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 45104044 - 45103536
Alignment:
| Q |
1 |
tctttgatcttgacacttcttctgattctagtgtagtattttctggtattattgtatatttctcaaaagagagtatgaatgtccttgcagtgaacgttga |
100 |
Q |
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|||||| ||||| ||||||||||||||| |||||||| | |||||||||| ||| |||| ||||||||||| ||||||||||||| |||| | | || |
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| T |
45104044 |
tctttgttcttggtacttcttctgattctggtgtagtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtggatggtgt |
45103945 |
T |
|
| Q |
101 |
tgattaagtatgaatctttttccccgagctatctgaaccgtccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaatt |
200 |
Q |
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|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45103944 |
tgataaaagatgaagttttttccccgagctatctgaaccgtccatctcactagaagatgataaactgcttccagaatatgtaacaggttgctgaagaatt |
45103845 |
T |
|
| Q |
201 |
atgtctctcaagaactcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103844 |
atgtctctcaagaactcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgaca |
45103745 |
T |
|
| Q |
301 |
gttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataaca-nnnnnnnnngttgatcataatgatttacgatttatnnnnnnncat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |
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| T |
45103744 |
gttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataacattttttttttgttgatcataatgatttaggatttataaaaaaacat |
45103645 |
T |
|
| Q |
400 |
aaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgtt |
499 |
Q |
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| T |
45103644 |
aaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgtt |
45103545 |
T |
|
| Q |
500 |
ctgttctgt |
508 |
Q |
| |
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||||||||| |
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| T |
45103544 |
ctgttctgt |
45103536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 45130670 - 45130384
Alignment:
| Q |
1 |
tctttgatcttgacacttcttctgattctagtgtagtattttctggtattattgtatatttctcaaaagagagtatgaatgtccttgcagtgaacgttga |
100 |
Q |
| |
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|||||| | |||||||||||||||||||| |||||||| | |||||||||| ||| |||| ||||||||||| ||||||||||||| |||||||| ||| |
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| T |
45130670 |
tctttggtattgacacttcttctgattctggtgtagtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtgaacggtga |
45130571 |
T |
|
| Q |
101 |
tgattaagtatgaatctttttccccgagctatctgaaccgtccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaatt |
200 |
Q |
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|||| ||| ||||| ||||||| |||| |||||| || ||||||||| |||| ||||||| ||| ||||||||||| ||||||||||||||| ||| |
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| T |
45130570 |
tgatgaaggatgaagctttttctttgagcaatctgagccatccatctcattagaggatgatatact---tccagaatatgtaacaggttgctgaaggatt |
45130474 |
T |
|
| Q |
201 |
atgtctctcaagaactcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgt |
290 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| | |||||||||| ||| |||||||||| |
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| T |
45130473 |
atgtctctcaagaactcttcttcatcatcagcactagtttgatgacaatattgccctagcaaaacctctacatcacccaattcctattgt |
45130384 |
T |
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