View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_7 (Length: 500)
Name: NF16791_low_7
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 48673646 - 48674130
Alignment:
| Q |
1 |
gatataacaatatgttaatcaaatgcatcaccaatattattaacttactttcaaatttatcctccatataacaacacatggacaagtttgattaaaatgt |
100 |
Q |
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| T |
48673646 |
gatataacaatatgttaatcaaatgcatcaccaatattattaacttactttcaaatttatcctccatataacaacacatggacaagtttgattaaaatgt |
48673745 |
T |
|
| Q |
101 |
tgcaatttcaggatccttttagaatatcaataatgtgagggattaaattctttcnnnnnnn-tgtgagggattagatttatacattgcaactaaatgatt |
199 |
Q |
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| T |
48673746 |
tgcaatttcaggatccttttagaatatcaataatgtgagggattaaattctttcaaaaaaaatgtgagggattagatttatacattgcaactaaatgatt |
48673845 |
T |
|
| Q |
200 |
gaatttaagtggttaaagagcttccattaatatgaatcatttggaagaatccaatttcgactcccggtggaaacaatttatcgtcagactttacttatct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| || |
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| T |
48673846 |
gaatttaagtggttaaagagcttccattaatatgaatcatttggaagaatccaatttcgacttcaggtgaaaacaatttatcgtcagactttacttacct |
48673945 |
T |
|
| Q |
300 |
ttcggctgaactttggattactaatgtccctttctcgaaaaaccggaggttaacaccaaaaaagattaatacattcctatgatttaaaagacgaatttga |
399 |
Q |
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| T |
48673946 |
ttcggctgaactttggattactaatgcccctttctcgagaaaccggaggttaacaccaaaaaagattaatacattcctataatttaaaagaccaatttga |
48674045 |
T |
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| Q |
400 |
atattaatttcatttttcattaaagaaaattatgatactcttgaatggttaacaaggtccaccactacctgataattgatgttga |
484 |
Q |
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| T |
48674046 |
atattaatttcatttttcattaaagaaaattatgatactcttgaatggttaacaaggtccaccactacctgataattgatgttga |
48674130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 48673491 - 48673555
Alignment:
| Q |
10 |
atatgttaatcaaatgcatcaccaatattattaacttactttcaaatttatcctccatataacaa |
74 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||||||||||||||| ||||| ||||||||| |
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| T |
48673491 |
atatgttaatcaaatgcaccaccaacattatcaacttactttcaaattcatccttgatataacaa |
48673555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 4156013 - 4156067
Alignment:
| Q |
81 |
gacaagtttgattaaaatgttgcaatttcag-gatccttttagaatatcaataat |
134 |
Q |
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| T |
4156013 |
gacaaatttgattaaaattttgcaatttcagagatcattttagaatatccataat |
4156067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 16297992 - 16297941
Alignment:
| Q |
282 |
gtcagactttacttatctttcggctgaactttggattactaatgtccctttc |
333 |
Q |
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| T |
16297992 |
gtcagactttacttatttttcggccgaactctggattactaaggtctctttc |
16297941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 40258808 - 40258868
Alignment:
| Q |
80 |
ggacaagtttgattaaaatgttgcaatttcag-gatccttttagaatatcaataatgtgag |
139 |
Q |
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|||||| |||||||||||| ||| |||||||| |||| |||| ||||||| |||||||||| |
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| T |
40258808 |
ggacaaatttgattaaaattttgtaatttcagagatcatttttgaatatcgataatgtgag |
40258868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 12241431 - 12241375
Alignment:
| Q |
87 |
tttgattaaaatgttgcaatttc-aggatccttttagaatatcaataatgtgaggga |
142 |
Q |
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| T |
12241431 |
tttgattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgaggga |
12241375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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