View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_9 (Length: 447)
Name: NF16791_low_9
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_9 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Original strand, 23462182 - 23462607
Alignment:
| Q |
22 |
cagtggcgtagccaagaccttggttaagccaatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaa |
121 |
Q |
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| T |
23462182 |
cagtggcgtagccaagaccttggttaagccaatacataaatttaagagggcattatcttacaataaacttcattaagctaaactttcgatccaaagtaaa |
23462281 |
T |
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| Q |
122 |
tatgaataattttagacaatccaacttggttaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcatt-------- |
213 |
Q |
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| T |
23462282 |
tatgaataattttagagaatccaacttggtcaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcattgtactgca |
23462381 |
T |
|
| Q |
214 |
-------ttcagccttcacctcttcaatttcagctttcaaatcttcaattacgcctttcaacttgtcaatcatatcttctttgatgagtaattttatttt |
306 |
Q |
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| T |
23462382 |
ctggaatttcagccttcacctcttcaatttcagctttcaaatcttcaattacgcctttcaacttgtcaatcatatcttctttgatgagtaattttatttt |
23462481 |
T |
|
| Q |
307 |
catcttagaattttcctctgccaaatcttcttcttttaccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23462482 |
catcttagaattttcctctgccaaatcttcttcttttaccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttc |
23462581 |
T |
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| Q |
407 |
ttctccgattcagacaacttatttct |
432 |
Q |
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| T |
23462582 |
ttctccgattcagacaacttatttct |
23462607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 24965106 - 24965274
Alignment:
| Q |
52 |
aatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaatatgaataattttagacaatccaacttgg- |
150 |
Q |
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| T |
24965106 |
aatacataagtttaagagggcatttcctcacaatgaacttcatcaaggtaaaatttcgatccaaaagaaatatgaataattataaacaatccaacttggt |
24965205 |
T |
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| Q |
151 |
------ttaatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcatt |
213 |
Q |
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| T |
24965206 |
caaggtttaacttttaagtttagatattgaaactaaaatttgcttgaccgccttatcaaacccagcatt |
24965274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 273 - 426
Target Start/End: Complemental strand, 23449466 - 23449313
Alignment:
| Q |
273 |
caatcatatcttctttgatgagtaattttattttcatcttagaattttcctctgccaaatcttcttcttttaccattgatcgacttttttccaagcttaa |
372 |
Q |
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|||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||| | |||||||||| ||||| || |||| |||||| ||||||| |
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| T |
23449466 |
caataatatcttctttgacaagtaattttatttgaatcttagaattttcctctatcaagttttcttctttttccattaattgactcttttccgagcttaa |
23449367 |
T |
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| Q |
373 |
ttcttccaaatttttctccaacttatctacgttcttctccgattcagacaactt |
426 |
Q |
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| T |
23449366 |
ttcttccaaattttccttcaacctacctacatccttctcatattcagacaactt |
23449313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 74431 - 74638
Alignment:
| Q |
52 |
aatacataaatttaagacggcattaccttacaataaacttcattaagctaaattttcgatccaaagtaaatatgaataattttagacaatccaacttggt |
151 |
Q |
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| T |
74431 |
aatacataagtttaagagggcatttcctcacaatgaacttcatcaaggtaaaatttcgatccaaaagaaatatgaataattataaacaatccaacttggt |
74530 |
T |
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| Q |
152 |
taatgtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcat---------------tttcagccttcacctcttcaattt |
236 |
Q |
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| T |
74531 |
caa-----------ggatattgaaactaaaatttgcttgaccatcttatcaaacccagcattgtgctgcactggaatttcagtcttcacctcttcaattt |
74619 |
T |
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| Q |
237 |
cagctttcaaatcttcaat |
255 |
Q |
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||||||||||||||||||| |
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| T |
74620 |
cagctttcaaatcttcaat |
74638 |
T |
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