View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_10 (Length: 364)
Name: NF16792_high_10
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 36650483 - 36650819
Alignment:
| Q |
18 |
tgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcgaaaaaggggtcagttctcacacttccactaggcactc |
117 |
Q |
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| T |
36650483 |
tgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcaaaaaaggggtcagttctcacacttccactaggcactc |
36650582 |
T |
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| Q |
118 |
caaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaaccaaggatttgctactagc |
217 |
Q |
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| T |
36650583 |
caagaataccaaacgcagccagatgctcaacaacattaaacacgctcatcaacatcatctgtccaagctgaagatcagcaaccaaggatttgctactagc |
36650682 |
T |
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| Q |
218 |
atggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtgtaaaatccata |
317 |
Q |
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| T |
36650683 |
atggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtgtaaaatccata |
36650782 |
T |
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| Q |
318 |
atgaatctattttctccagtgagctcgttcatctcac |
354 |
Q |
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| T |
36650783 |
atgaaactattttctccagtgagctcgttcatctcac |
36650819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 36643039 - 36642879
Alignment:
| Q |
66 |
cttacattactgtcgaaaaaggggtcagttctcacacttccactaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctca |
165 |
Q |
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| T |
36643039 |
cttaaattactgttgaaatagggatcagttttcacatttccactaggtaagccgaaaatgccgaaggcacccagattctcgacgacattaaacacgctca |
36642940 |
T |
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| Q |
166 |
tcaacatcatctgtccgagctgaagatcagcaaccaaggatttgctactagcatggtaacc |
226 |
Q |
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| T |
36642939 |
tcaacatcatctgtacgagctgaagatcggaaaccaagcatttgctagtagcatagtaacc |
36642879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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