View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_11 (Length: 343)
Name: NF16792_high_11
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 52373958 - 52373639
Alignment:
| Q |
9 |
caagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacat-cactcttaaccaaaacaagccatccaacttctacacc |
107 |
Q |
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| T |
52373958 |
caagaagcttctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctacacc |
52373859 |
T |
|
| Q |
108 |
ctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373858 |
ctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattaca |
52373759 |
T |
|
| Q |
208 |
accgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatctttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373758 |
accgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatctttt |
52373659 |
T |
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| Q |
308 |
cactattttgaagctgtata |
327 |
Q |
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||| |||||||||||||||| |
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| T |
52373658 |
caccattttgaagctgtata |
52373639 |
T |
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