View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_13 (Length: 295)
Name: NF16792_high_13
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 36571574 - 36571859
Alignment:
| Q |
1 |
agcaaaggaggtcctttttccaacacatgatgaatgaaaagtatgatactcctaactgttttgcttaatcaaaagttggattgtagtggatgattttgtt |
100 |
Q |
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| T |
36571574 |
agcaaaggaggtcctttttccaacacatgatgaatgaaaagtatgatactcctaactgttttgattaatcaaaagttggattgtagtggatgattttgtt |
36571673 |
T |
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| Q |
101 |
cccaacaaactttgattagatagaggtagactgaaaaacgaacccgtgggaccttcacgaccatatgtgagtgactataagtccttac-----attagat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36571674 |
cccaacaaactttgattagatagaggtagactgaaaaacgaacccgtgggaccttcacgaccatatgtgagtgactataagtccttacattagattagat |
36571773 |
T |
|
| Q |
196 |
tagattatggtaataattttattttatggtggttggaagtgggtgatagatatgtttgggaaaacaaccacttagtaccaaatttg |
281 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571774 |
tagattatggtaataattttattttatggttgttggaagtgggtgatagatatgtttgggaaaacaaccacttagtaccaaatttg |
36571859 |
T |
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