View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_24 (Length: 237)
Name: NF16792_high_24
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2534578 - 2534798
Alignment:
| Q |
1 |
caattggaaaaacatttcacctccacagtctagtattatttcagattgatagataactcaaacttggaaacaattataccatcactatctgcataaagcc |
100 |
Q |
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| T |
2534578 |
caattgaaaaaacatttcacctccacagtctagtattatttcagattgatagataactcaaacttggaaacaattataccatcactatctgcataaagcc |
2534677 |
T |
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| Q |
101 |
attctccatcacgaataaacgttcctccaacataaacatcaacatgtttttcaccagtacccttttcattagatccaagtggataagaacccaaagctct |
200 |
Q |
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| T |
2534678 |
attctccatcacgaataaacgttcctccaacataaacatcaacatgtttttcaccagtacccttttcattagatccaagtggataagaacccaaagctct |
2534777 |
T |
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| Q |
201 |
aacaccaacttgacacaaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
2534778 |
aacaccaacttgacacaaatt |
2534798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 2538025 - 2538191
Alignment:
| Q |
55 |
aactcaaacttggaaacaattataccatcactatctgcataaagccattctccatcacgaataaacgttcctccaacataaacatcaacatgtttttcac |
154 |
Q |
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|||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
2538025 |
aactcaaacttggatacaatgataccatcattatctgcatagagccattctccatcacgaataaaagttcctccaacataaacagcaacatgtttttcac |
2538124 |
T |
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| Q |
155 |
cagtacccttttcattagatccaagtggataagaacccaaagctctaacaccaacttgacacaaatt |
221 |
Q |
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||||||| |||| ||| ||| |||||||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
2538125 |
cagtaccgtttttattggatttaagtggatgagaagccaaagctctaacaccaacctgacacaaatt |
2538191 |
T |
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