View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_27 (Length: 232)
Name: NF16792_high_27
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2999131 - 2999336
Alignment:
| Q |
1 |
tgaaaatgtcctcacgacagacatattgggtttatttatttaaaaagaatannnnnnnnatactctgtcaagtttcaacacgcactcttgtcgtttcggg |
100 |
Q |
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| T |
2999131 |
tgaagatgtcctcacaacagacatattgggtttatttatttaaaaagaatattttttttatactctttcaagtttta-cacgcactcttgtcgtttcggg |
2999229 |
T |
|
| Q |
101 |
cggtacggataaagatactgtagcaagaaacatgaatcagtgcatcgcatgtactatgtttatggcatttattctcatgttaatgagtgttttatttttc |
200 |
Q |
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| T |
2999230 |
cgatacggataaagatactgtagcaagaaacatgaatcagtgcatcatatgtactatgtttatggcatttattctcatgttaatgagtgttttatttttc |
2999329 |
T |
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| Q |
201 |
ctacaca |
207 |
Q |
| |
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||||||| |
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| T |
2999330 |
ctacaca |
2999336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 32718132 - 32718215
Alignment:
| Q |
121 |
tagcaagaaacatgaatcagtgcatcgcatgtactatgtttatggcatttattctcatgttaatgagtgttttatttttcctac |
204 |
Q |
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| T |
32718132 |
tagcaaaaatcaagaatccgtgcatcacatgtactgtgtttatggcatttattctcatgttaatttgtgttttatttctcctac |
32718215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 32705974 - 32706015
Alignment:
| Q |
163 |
tggcatttattctcatgttaatgagtgttttatttttcctac |
204 |
Q |
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| T |
32705974 |
tggcatttattctcatgttaatgagtgttttatttttcctac |
32706015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 34543995 - 34543949
Alignment:
| Q |
157 |
tgtttatggcatttattctcatgttaatgagtgttttatttttccta |
203 |
Q |
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||||||||||||| ||||||||||| |||||||||| | |||||||| |
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| T |
34543995 |
tgtttatggcattaattctcatgttcatgagtgtttaaattttccta |
34543949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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