View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_3 (Length: 523)
Name: NF16792_high_3
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 1832735 - 1832214
Alignment:
| Q |
14 |
atgaaaaccgaaccacaactctctacccagaaataaaatcacaaactatgattggttatgaataatacaaattaaataaatccctcaaatttaccttgtt |
113 |
Q |
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| T |
1832735 |
atgaaaaccgaaccacaactctctacccagaaataaaatcacaaactatgattggttatgaataatacaaattaaataaatccctcaaatttaccttgtt |
1832636 |
T |
|
| Q |
114 |
tttcatttcacacacattggtcactccgaacataagttacattacaacctcaaaatctcaaacaaaccaaagcctcacaaacaaacatcattaattcatc |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832635 |
tttcatttcacacacattggtcactccgaacacaagttacattacaacctcaaaatctcaaacaaaccaaagcctcacaaacaaacatcattaattcatc |
1832536 |
T |
|
| Q |
214 |
atcacacttcaattgttgttgttc---tgttccaatggagagttttgcacttcactcactctccacaacttcttcacctaccttcttcctccatcatct- |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832535 |
atcacacttcaattgttgttgttctgttgttccaatggagagttttgcacttcactcactctccacaacttcttcacctaccttcttcctccatcatctt |
1832436 |
T |
|
| Q |
310 |
--------tcgttcttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccatcactcaaatcatcaccaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1832435 |
catcatcatcgttcttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccatcactcaaatcatcacaat |
1832336 |
T |
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| Q |
402 |
ccttctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattcatgctaattcaactccaccaccttcaccatcatcccc |
501 |
Q |
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| T |
1832335 |
ccttctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattcatgctaattcaactccaccaccttcaccatcatcccc |
1832236 |
T |
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| Q |
502 |
accaaaacccaatattcttcaa |
523 |
Q |
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| T |
1832235 |
accaaaacccaatattcttcaa |
1832214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 291 - 484
Target Start/End: Complemental strand, 21011706 - 21011508
Alignment:
| Q |
291 |
ccttcttcctccatcatcttcgttc-ttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccatcactca |
389 |
Q |
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||||||||||| |||||| |||||| ||||| |||||||| |||||||| || ||||| |||||||||||| |||| ||||||| ||| ||||||| | |
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| T |
21011706 |
ccttcttcctcaatcatcatcgttccttcac-acccatctccagatctctatcctctc---ttccacaaaacc-atctccacgttcgatctcatcactga |
21011612 |
T |
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| Q |
390 |
aatcatcaccaacct---------tctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattcatgctaattcaactcc |
480 |
Q |
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|||| |||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||| |
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| T |
21011611 |
aatcgtcaccaacctcacaatccttctcgtttccctccaaagtttcaacctttaaccttttcttaaaactccatttcccaactcatgctaattcaaatcc |
21011512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 284 - 465
Target Start/End: Original strand, 41905583 - 41905761
Alignment:
| Q |
284 |
tcacctaccttcttcctccatcatcttcgttcttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccat |
383 |
Q |
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||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
41905583 |
tcacccaccttcttcctccatcatcatcgttcttcatgacccatctccagatctcaatcctctc---ttccacaaaacc---------gttcaatcccat |
41905670 |
T |
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| Q |
384 |
cactcaaatcatcaccaacct---------tctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattca |
465 |
Q |
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| T |
41905671 |
cactcaaatcatcaccaacctcacaatccttctcttttccctccaaagtttcaacctttaaccttttctcaaaaccccatttcccaattca |
41905761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 290 - 465
Target Start/End: Complemental strand, 9416798 - 9416626
Alignment:
| Q |
290 |
accttcttcctccatcatcttcgttcttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccatcactca |
389 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
9416798 |
accttcttcctccatcatcatcgttcttcatgacccatctccagatctcaatcctctc---ttccacaaaacc---------gttcaatcccatcactca |
9416711 |
T |
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| Q |
390 |
aatcatcaccaacct---------tctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattca |
465 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9416710 |
aatcatcaccaacctcacaatccttctcttttccctccaaagtttcaacctttaaccttttctcaaaaccccatttcccaattca |
9416626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 284 - 465
Target Start/End: Complemental strand, 44114362 - 44114184
Alignment:
| Q |
284 |
tcacctaccttcttcctccatcatcttcgttcttcacgacccatcttcagatctcaattctctcctcttccacaaaacccatcttcacgttcaatcccat |
383 |
Q |
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||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
44114362 |
tcacccaccttcttcctccatcatcatcgttcttcatgacccatctccagatctcaatcctctc---ttccacaaaacc---------gttcaatcccat |
44114275 |
T |
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| Q |
384 |
cactcaaatcatcaccaacct---------tctcttttccctctaaagtttcaacctttaaccttttctcaaaaccccatttcccaattca |
465 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44114274 |
cactcaaatcatcaccaacctcttaatccttctcttttccctccaaagtttcaacttttaaccttttctcaaaaccccatttcccaattca |
44114184 |
T |
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