View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_31 (Length: 217)
Name: NF16792_high_31
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5725905 - 5726106
Alignment:
| Q |
1 |
tggaaaattcgtcgaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttg |
100 |
Q |
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| T |
5725905 |
tggaaaattcgtcgaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttg |
5726004 |
T |
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| Q |
101 |
gtcagttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaaggagttgatacagaggctttccaaaagtggcatagaaaggt |
200 |
Q |
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| T |
5726005 |
gtcagttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaaggagttgatacagaggctttccaaaagtggcatagaaaggt |
5726104 |
T |
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| Q |
201 |
at |
202 |
Q |
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|| |
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| T |
5726105 |
at |
5726106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 4389630 - 4389476
Alignment:
| Q |
5 |
aaattcgtcgaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttggtca |
104 |
Q |
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| T |
4389630 |
aaatttgttgaggatgtggttttggacaaggagttttggaaaaatgttatgatttgtttgaaaggtgcaaatcctctgattgatgtgctttgtttggtca |
4389531 |
T |
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| Q |
105 |
gttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaa |
159 |
Q |
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| T |
4389530 |
attcaattgatgaaccagccaccggtttcatttatgaagcaatggagaaagctaa |
4389476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 4376945 - 4376791
Alignment:
| Q |
5 |
aaattcgtcgaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttggtca |
104 |
Q |
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| T |
4376945 |
aaatttgttgaggatgtggttttggacaaggagttttggaaaaatgttatgatttgtttgaacggcgcaaatcctctgcttgatgtgcttcgtttggtca |
4376846 |
T |
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| Q |
105 |
gttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaa |
159 |
Q |
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| T |
4376845 |
atacaatcgatgaaccagccactggtttcatttatgaagcaatggagaaagctaa |
4376791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 4384509 - 4384364
Alignment:
| Q |
14 |
gaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttggtcagttcaattg |
113 |
Q |
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| T |
4384509 |
gaggatgtggttttggacaaggagttctggaaaaatgttacgaattgtttgaacggcgcaaatcctctgcttgatgtgcttcgtttggtcaattcaatcg |
4384410 |
T |
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| Q |
114 |
acgaaccagccatgggtttcatttacgaggcaatggagaaagctaa |
159 |
Q |
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| T |
4384409 |
atgaaccagccaccggtttcatttatgaagcaatggagaaagctaa |
4384364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 4414924 - 4415123
Alignment:
| Q |
5 |
aaattcgtcgaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttggtca |
104 |
Q |
| |
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|||| |||||||||| |||||||||||| | ||||||| || | || |||||||||| |||| ||||| |||| |||||| |||||||| ||||||||| |
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| T |
4414924 |
aaatacgtcgaggatgtggttttggacacagggttttgggaaaacgtcatgatttgttttaaaagtgcacatcccctggttgaagtgctttgtttggtca |
4415023 |
T |
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| Q |
105 |
gttcaattgacgaaccagccatgggtttcatttacgaggcaatggagaaagctaaggagttgatac---agaggctttccaaaagtggcatagaaaggta |
201 |
Q |
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| T |
4415024 |
gttcaatagatgagccagccaccggttccatttatgaggcattggagcaagctaaagaggagatacgaaggagtctttccaaaggtgtcatagaaaggta |
4415123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 4359979 - 4359843
Alignment:
| Q |
22 |
ggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctggttcaagtgcttcgtttggtcagttcaattgacgaacca |
121 |
Q |
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| T |
4359979 |
ggttttgaacaaagggttttggaaaaatgttatgatttgttataaaggtatatatcctatacttgaagtgtttcgtttggccaattcaatcgagaaacca |
4359880 |
T |
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| Q |
122 |
gccatgggtttcatttacgaggcaatggagaaagcta |
158 |
Q |
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| T |
4359879 |
actatgggtttcatttatgaggcaatggtgaaagcta |
4359843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 4365380 - 4365312
Alignment:
| Q |
14 |
gaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctg |
82 |
Q |
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| T |
4365380 |
gaggatatgattttggacaaggagttttggaaatatgttatgatttgttataaaggtgtaaaacctctg |
4365312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 4369774 - 4369706
Alignment:
| Q |
14 |
gaggatttggttttggacaaggagttttggaaagatgttatgatttgttataaaggtgcaaatcctctg |
82 |
Q |
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| T |
4369774 |
gaggatatgattttggacaaggagttttggaaatatgttatgatttgttataaaggtgtaaaacctctg |
4369706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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