View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_32 (Length: 210)
Name: NF16792_high_32
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_32 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 21376141 - 21376333
Alignment:
| Q |
1 |
aaaagaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactcttttctc |
100 |
Q |
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| T |
21376141 |
aaaagaatgatttctattttattattgagaaaaagcaatcttgtcttgcttcttggaagaataaactgttaaacaaatctggaagaatgactcttgcctc |
21376240 |
T |
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| Q |
101 |
ctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaattt |
193 |
Q |
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| T |
21376241 |
ctctgttctctcctctattcctccatattatatggaatttttttggcttcctcaatcaatttgtaatcgcattgatcaaacaaccaggaattt |
21376333 |
T |
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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 35062781 - 35062718
Alignment:
| Q |
5 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactg |
68 |
Q |
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| T |
35062781 |
gaatgatttttattttattattgagaaaatgcaatatagacttgcttcttggaagaatagactg |
35062718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 9535188 - 9535278
Alignment:
| Q |
5 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactctt |
95 |
Q |
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| T |
9535188 |
gaatgatttttattttattattgagataatgcaattcagactcgctttttggaagaatagattgctaaacaaacctgatagattgactctt |
9535278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17774 - 17722
Alignment:
| Q |
9 |
gatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaa |
61 |
Q |
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| T |
17774 |
gatttctattttattattgagaaaatgtaaactagacttgcttcttggaagaa |
17722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 27781285 - 27781206
Alignment:
| Q |
16 |
attttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactctt |
95 |
Q |
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| T |
27781285 |
attttgttattgacaaaatgcatactcgtcttgcttattggaagaacaaattgttaaataaacctggaagattggctctt |
27781206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 1353457 - 1353424
Alignment:
| Q |
5 |
gaatgatttctattttattattgagaaaatgcaa |
38 |
Q |
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| T |
1353457 |
gaataatttctattttattattgagaaaatgcaa |
1353424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 27153729 - 27153857
Alignment:
| Q |
6 |
aatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactcttttctcctctg |
105 |
Q |
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||||| ||| ||||||||||||| ||| ||||||| | | ||| ||||||||| | || ||||||| ||||| ||||| ||||||||| || |||| |
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| T |
27153729 |
aatgacttccattttattattgaaaaattgcaatccagacctgcctcttggaagcacaggttgttaaataaaccaggaagtatgactcttgcatcttctg |
27153828 |
T |
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| Q |
106 |
ttctctcctctattcctccatattatatg |
134 |
Q |
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| T |
27153829 |
ttctttcctccattccctcttattatatg |
27153857 |
T |
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