View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_high_6 (Length: 463)
Name: NF16792_high_6
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 44708354 - 44708610
Alignment:
| Q |
23 |
cataccgacatgaatgtttgtcagatacgaaatagtagcaacaagcaatggagagagaatgggatagttggttgatgaatgaaagaggatgaagaaaaat |
122 |
Q |
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| T |
44708354 |
cataccgacatgaagttttgtcagatacgaaatagtagcaacaagcaatggagagataatgggatagttggttgatgaa----agaggatgaagaaaaat |
44708449 |
T |
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| Q |
123 |
gtattattgttaatgaatgaatacaaaaacaaggaagggtattctggtaatttgaaaaatggaatatgattcttctcgtgagtagaataacgcagagttc |
222 |
Q |
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| T |
44708450 |
gtat----gttaatgaatgaatacaaaaacagggaagggtattctggtaatttgaaaaatggaatatgattcttctcgtgagtagaataacgcagagttc |
44708545 |
T |
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| Q |
223 |
gcgctttcagatttacgttagtgcatccaaactaactcaa-ctgtccttctttgtcccacttcat |
286 |
Q |
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| T |
44708546 |
gcgctttcagatttgcgttagtgcatccaaactaactcaaccggtccttctttgtcccacttcat |
44708610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 44708658 - 44708778
Alignment:
| Q |
334 |
ctcctacggtatcctt-tgacgcccttgaatacacttattttataatcggaagtgcatgtatttgacttttttagattgttatagactttgaactataca |
432 |
Q |
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| T |
44708658 |
ctcccacggtatccttgtgacgcccttgaatacacttattttataatcggaagtgcatgtatttgacttttttagattgttatagacttcgagctataca |
44708757 |
T |
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| Q |
433 |
tctctctttttcgaccctttg |
453 |
Q |
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| T |
44708758 |
tctctctttttcgaccttttg |
44708778 |
T |
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