View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16792_high_9 (Length: 371)
Name: NF16792_high_9
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 83 - 360
Target Start/End: Complemental strand, 36545728 - 36545451
Alignment:
| Q |
83 |
aacaaatcctaagtttaatgaaataacaatatataattttctcactttatactttactcactttacacgagccaaattcatcaatcaccaaacaatgacg |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36545728 |
aacaaatcctaagtttaatgaaataacaatatataattttctcactttatactttactcactttacacgagccaaattcatcaatcaccgaacaatgacg |
36545629 |
T |
|
| Q |
183 |
aaatgaacaatgaactcaatacaagccgaactcaaatttaaaagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagnnnnnnngaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36545628 |
aaatgaacaatgaactcaatacaagccgaactcaaatttaaaagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagaaaaaaagaa |
36545529 |
T |
|
| Q |
283 |
taagaatagacacacaaagtatgcatgctacgttgtttccttaaaattgggaaaggaacattttccacaagacccttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545528 |
taagaatagacacacaaagtatgcatgctacgttgtttccttaaaattgggaaaggaacattttccacaagacccttt |
36545451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 36545763 - 36545716
Alignment:
| Q |
18 |
caacggatcaaaggtggatactgcaagtatatcgtaacaaatcctaag |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545763 |
caacggatcaaaggtggatactgcaagtatatcgtaacaaatcctaag |
36545716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 35229458 - 35229429
Alignment:
| Q |
118 |
attttctcactttatactttactcacttta |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35229458 |
attttctcactttatactttactcacttta |
35229429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University