View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_1 (Length: 780)
Name: NF16792_low_1
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 11 - 763
Target Start/End: Complemental strand, 26017996 - 26017235
Alignment:
| Q |
11 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtacttt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26017996 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaaaaagtcatgatgaggttcaattctgagtacttt |
26017897 |
T |
|
| Q |
111 |
ggtctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
210 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017896 |
ggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
26017797 |
T |
|
| Q |
211 |
tcaacatatcctccctnnnnnnn----ttcaaaactaatttagtacctttaagatatcctaaactacaaacaaaggtttcaattacgaaagacaaacagg |
306 |
Q |
| |
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|| ||||||||||||| ||||||||||| | |||||||| | || ||||||||||||||| |||||||||||| || ||||||| | |
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| T |
26017796 |
tctacatatcctccctacaaaataaatttcaaaactaactaagtaccttcatgagatcctaaactacaaa----ggtttcaattaccaacgacaaacgga |
26017701 |
T |
|
| Q |
307 |
aaaatcgccatcatcatcat---------cacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctca |
397 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||| |
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| T |
26017700 |
aaaattgctatcatcatcattatcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctca |
26017601 |
T |
|
| Q |
398 |
gcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccat |
497 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26017600 |
gcaacacctcctctactgatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagcaagagccaccat |
26017501 |
T |
|
| Q |
498 |
taagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacac |
597 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26017500 |
taagatcttcttttaagaaatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacac |
26017401 |
T |
|
| Q |
598 |
attcttttccaagttacgtgcagcaaattctgaagcttttgtacctccatgtccatcaaatatgccnnnnnnngcctgtaccaatcacaaacaaaaatct |
697 |
Q |
| |
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||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26017400 |
attcttttccaagttctgtgccgcgaattccgaagcttttgtacctccatgtccatcaaatatgccaaaaaatgcctgtaccaatcacaaacaaaaatct |
26017301 |
T |
|
| Q |
698 |
tagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataa |
763 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26017300 |
tagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataa |
26017235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 330 - 663
Target Start/End: Complemental strand, 26002856 - 26002523
Alignment:
| Q |
330 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgaca |
429 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| || |||||||| ||||| |
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| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggcttcagcagcacctccatggctgatgacagcacgaca |
26002757 |
T |
|
| Q |
430 |
atcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgtt |
529 |
Q |
| |
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||| || |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26002756 |
atcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaagaaatctgaatctgtt |
26002657 |
T |
|
| Q |
530 |
ttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctg |
629 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| | |
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|
| T |
26002656 |
ttgaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagttctgtgccgcgaattccg |
26002557 |
T |
|
| Q |
630 |
aagcttttgtacctccatgtccatcaaatatgcc |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
26002556 |
aagcttttgtacctccatgtccatcaaatatgcc |
26002523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 26003247 - 26003035
Alignment:
| Q |
14 |
aacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggt |
113 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26003247 |
aacatcgcaattaattggtcaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatgatgaggttcaattctgagtactttggt |
26003148 |
T |
|
| Q |
114 |
ctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatca |
213 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003147 |
ctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcg |
26003048 |
T |
|
| Q |
214 |
acatatcctccct |
226 |
Q |
| |
|
||||||||||||| |
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|
| T |
26003047 |
acatatcctccct |
26003035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 30374471 - 30374295
Alignment:
| Q |
42 |
taccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttc |
141 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||| ||||| ||||| ||| |||||||||||||| |
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|
| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
142 |
atgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcaacata |
218 |
Q |
| |
|
| ||||| || ||||| | ||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| |
|
|
| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcgacataaatcaacata |
30374295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 350 - 659
Target Start/End: Complemental strand, 30374166 - 30373857
Alignment:
| Q |
350 |
tccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaa |
449 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||| |
|
|
| T |
30374166 |
tccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaa |
30374067 |
T |
|
| Q |
450 |
caaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcac |
549 |
Q |
| |
|
| | ||||||||||||||| |||||||| || || ||||| ||||||| ||||| | ||| | ||| || ||||| || ||||||||||| ||||||| |
|
|
| T |
30374066 |
ctaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattgaggtaaccgcgcttcac |
30373967 |
T |
|
| Q |
550 |
tgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaagcttttgtacctccatgt |
649 |
Q |
| |
|
||| ||||||| |||| || || || |||| ||||| || || | |||||||| ||||| ||| |||||||| | ||||| | |||||||||| |
|
|
| T |
30373966 |
tgcctcctcaacatcatctttgtcgctcatgataacttcgtccaagatgttcttttctaagttgtttgccgcaaattcagcggctttggcacctccatgt |
30373867 |
T |
|
| Q |
650 |
ccatcaaata |
659 |
Q |
| |
|
|||||||||| |
|
|
| T |
30373866 |
ccatcaaata |
30373857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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