View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16792_low_16 (Length: 280)

Name: NF16792_low_16
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16792_low_16
NF16792_low_16
[»] chr4 (4 HSPs)
chr4 (1-127)||(21161172-21161298)
chr4 (147-209)||(19486706-19486765)
chr4 (147-179)||(24785483-24785515)
chr4 (147-179)||(24822751-24822783)
[»] chr6 (6 HSPs)
chr6 (179-215)||(9973252-9973288)
chr6 (147-181)||(5008847-5008881)
chr6 (179-216)||(10018433-10018470)
chr6 (149-178)||(10566741-10566770)
chr6 (147-179)||(26521136-26521168)
chr6 (147-179)||(26522480-26522512)
[»] chr5 (2 HSPs)
chr5 (149-216)||(23118041-23118102)
chr5 (181-209)||(6025345-6025373)
[»] chr2 (4 HSPs)
chr2 (149-184)||(2661064-2661099)
chr2 (147-216)||(4238767-4238830)
chr2 (147-179)||(7413210-7413242)
chr2 (142-178)||(31963088-31963124)
[»] chr7 (4 HSPs)
chr7 (154-192)||(36731156-36731194)
chr7 (147-180)||(1398417-1398450)
chr7 (147-215)||(9522920-9522982)
chr7 (179-208)||(40185744-40185773)
[»] scaffold0259 (1 HSPs)
scaffold0259 (150-183)||(19399-19432)
[»] chr3 (4 HSPs)
chr3 (147-184)||(2151068-2151105)
chr3 (179-216)||(27432268-27432305)
chr3 (147-179)||(13992679-13992711)
chr3 (147-179)||(39822193-39822225)
[»] chr1 (2 HSPs)
chr1 (179-216)||(34083371-34083408)
chr1 (179-215)||(38000078-38000114)
[»] chr8 (5 HSPs)
chr8 (147-179)||(1244726-1244758)
chr8 (147-179)||(5179801-5179833)
chr8 (147-179)||(19488308-19488340)
chr8 (147-179)||(38282860-38282892)
chr8 (184-216)||(44159101-44159133)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 21161172 - 21161298
Alignment:
Q  1 agttacaataaattcgaagttccaaaccaatatttactaaccacaataaacaaatcaaattttgttatctagcagtagtaactaaccagtgtgttagaaa 100  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21161172 agttacaataaattcaaagttgcgaaccaatatttactaaccacaataaacaaatcaaattttgttatctagtagtagtaactaaccagtgtgttagaaa 21161271  T
Q  101 ttagaaaatgttaaaaaatgtgaagta 127  Q
    |||||||||||||| ||||||||||||    
T  21161272 ttagaaaatgttaagaaatgtgaagta 21161298  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 19486765 - 19486706
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatatatatgtaaggtttggggttcgaactccgg 209  Q
    ||||||||| |||||||||||||||| ||   ||||||||||| | |||||||||||| ||||    
T  19486765 agctcagttagtaaggacaatgcataata---atatatgtaagatctggggttcgaaccccgg 19486706  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 24785515 - 24785483
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  24785515 agctcagttggtaaggacaatgcataatatata 24785483  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 24822751 - 24822783
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  24822751 agctcagttggtaaggacaatgcataatatata 24822783  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 9973252 - 9973288
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccggccacca 215  Q
    |||||||||||||||||||||||||||||||||||||    
T  9973252 atatatgtaaggtttggggttcgaactccggccacca 9973288  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 5008847 - 5008881
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatata 181  Q
    |||||||||||||||||||||||||| ||||||||    
T  5008847 agctcagttggtaaggacaatgcataatatatata 5008881  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 10018433 - 10018470
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccggccaccac 216  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  10018433 atatatgtaaggttcggggttcaaactccggccaccac 10018470  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 10566741 - 10566770
Alignment:
Q  149 ctcagttggtaaggacaatgcatactatat 178  Q
    ||||||||||||||||||||||||||||||    
T  10566741 ctcagttggtaaggacaatgcatactatat 10566770  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 26521168 - 26521136
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  26521168 agctcagttggtaaggacaatgcataatatata 26521136  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 26522480 - 26522512
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  26522480 agctcagttggtaaggacaatgcataatatata 26522512  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 23118102 - 23118041
Alignment:
Q  149 ctcagttggtaaggacaatgcatactatatatatatgtaaggtttggggttcgaactccggccaccac 216  Q
    |||||||| |||||||||||||||      |||||||||||||||||||||||||||| || ||||||    
T  23118102 ctcagttgataaggacaatgcata------atatatgtaaggtttggggttcgaactctggacaccac 23118041  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 6025345 - 6025373
Alignment:
Q  181 atatgtaaggtttggggttcgaactccgg 209  Q
    |||||||||||||||||||||||||||||    
T  6025345 atatgtaaggtttggggttcgaactccgg 6025373  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 2661099 - 2661064
Alignment:
Q  149 ctcagttggtaaggacaatgcatactatatatatat 184  Q
    |||||||||||||||||||||||| |||||||||||    
T  2661099 ctcagttggtaaggacaatgcataatatatatatat 2661064  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 4238767 - 4238830
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatatatatgtaaggtttggggttcgaactccggccaccac 216  Q
    ||||||||| ||| ||||||||||||      |||||||||||||| ||||||||||||||| |||||||    
T  4238767 agctcagttagtatggacaatgcata------atatatgtaaggttcggggttcgaactccgaccaccac 4238830  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 7413242 - 7413210
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  7413242 agctcagttggtaaggacaatgcataatatata 7413210  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 31963124 - 31963088
Alignment:
Q  142 agtagagctcagttggtaaggacaatgcatactatat 178  Q
    |||| |||||||||||||||||||||||||| |||||    
T  31963124 agtatagctcagttggtaaggacaatgcataatatat 31963088  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 36731156 - 36731194
Alignment:
Q  154 ttggtaaggacaatgcatactatatatatatgtaaggtt 192  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  36731156 ttggtaaagacaatgcataatatatatatatgtaaggtt 36731194  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 1398450 - 1398417
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatat 180  Q
    |||||||||||||||||||||||||| |||||||    
T  1398450 agctcagttggtaaggacaatgcataatatatat 1398417  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 9522920 - 9522982
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatatatatgtaaggtttggggttcgaactccggccacca 215  Q
    ||||||||||||| | ||||||||||      ||||||| |||||||||||||||||| ||||||||||    
T  9522920 agctcagttggtatgaacaatgcata------atatatgcaaggtttggggttcgaaccccggccacca 9522982  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 40185773 - 40185744
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccg 208  Q
    ||||||||||||||||||||||||||||||    
T  40185773 atatatgtaaggtttggggttcgaactccg 40185744  T

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Target: scaffold0259 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 19399 - 19432
Alignment:
Q  150 tcagttggtaaggacaatgcatactatatatata 183  Q
    ||||||||||||||||||||||| ||||||||||    
T  19399 tcagttggtaaggacaatgcataatatatatata 19432  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 2151068 - 2151105
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatatatatat 184  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  2151068 agctcagttggtagggacaatgcataatatatatatat 2151105  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 27432268 - 27432305
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccggccaccac 216  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  27432268 atatatgtaaggtatggggttcgaattccggccaccac 27432305  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 13992679 - 13992711
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  13992679 agctcagttggtaaggacaatgcataatatata 13992711  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 39822225 - 39822193
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  39822225 agctcagttggtaaggacaatgcataatatata 39822193  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 34083371 - 34083408
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccggccaccac 216  Q
    |||||||||||||||||||||||||| || ||||||||    
T  34083371 atatatgtaaggtttggggttcgaaccccagccaccac 34083408  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 38000078 - 38000114
Alignment:
Q  179 atatatgtaaggtttggggttcgaactccggccacca 215  Q
    |||||||||||||| |||||||||| |||||||||||    
T  38000078 atatatgtaaggttcggggttcgaattccggccacca 38000114  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 1244758 - 1244726
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  1244758 agctcagttggtaaggacaatgcataatatata 1244726  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 5179801 - 5179833
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  5179801 agctcagttggtaaggacaatgcataatatata 5179833  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 19488308 - 19488340
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  19488308 agctcagttggtaaggacaatgcataatatata 19488340  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 38282892 - 38282860
Alignment:
Q  147 agctcagttggtaaggacaatgcatactatata 179  Q
    |||||||||||||||||||||||||| ||||||    
T  38282892 agctcagttggtaaggacaatgcatagtatata 38282860  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 44159101 - 44159133
Alignment:
Q  184 tgtaaggtttggggttcgaactccggccaccac 216  Q
    |||||||| ||||||||||||||||||||||||    
T  44159101 tgtaaggtctggggttcgaactccggccaccac 44159133  T

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