View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16792_low_17 (Length: 273)

Name: NF16792_low_17
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16792_low_17
NF16792_low_17
[»] chr8 (2 HSPs)
chr8 (16-236)||(32535758-32535979)
chr8 (175-230)||(18481332-18481387)
[»] chr3 (7 HSPs)
chr3 (175-258)||(51976830-51976914)
chr3 (175-230)||(36685004-36685059)
chr3 (168-230)||(26390514-26390576)
chr3 (164-230)||(8705811-8705877)
chr3 (164-230)||(9057698-9057764)
chr3 (164-224)||(25130979-25131039)
chr3 (182-230)||(45736565-45736613)
[»] chr5 (6 HSPs)
chr5 (175-230)||(12378565-12378620)
chr5 (175-230)||(41197313-41197368)
chr5 (164-230)||(30376373-30376439)
chr5 (168-230)||(34905674-34905736)
chr5 (168-228)||(36779353-36779413)
chr5 (164-230)||(39714923-39714989)
[»] chr2 (2 HSPs)
chr2 (175-230)||(24543312-24543367)
chr2 (175-230)||(29894278-29894333)
[»] chr1 (4 HSPs)
chr1 (175-230)||(11351554-11351609)
chr1 (170-223)||(25396209-25396262)
chr1 (175-230)||(21515302-21515357)
chr1 (180-230)||(32988848-32988898)
[»] chr6 (1 HSPs)
chr6 (175-230)||(942792-942847)
[»] chr4 (3 HSPs)
chr4 (175-230)||(43989215-43989270)
chr4 (168-229)||(19315840-19315901)
chr4 (182-223)||(48563990-48564031)
[»] chr7 (1 HSPs)
chr7 (172-234)||(23820618-23820680)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 32535758 - 32535979
Alignment:
Q  16 gcaaaagtggggttttttcttgtaaaaagtctgcatagccttaagctacaattggtatgagaggagggagtgccattatggcattgatcctaagaaattg 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||    
T  32535758 gcaaaagtgaggttttttcttgtaaaaagtctgcatagccttaagctacaattgatatgagaggagggagtaccattatggcattggtcctaagaaattg 32535857  T
Q  116 gtataccagcggagctattgtggtcactaagaccaaatcta-nnnnnnnaggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgat 214  Q
    ||||||||||||||||||||| ||||||| |||||||||||        ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32535858 gtataccagcggagctattgtagtcactacgaccaaatctattttttttaggaaagaaaatcattgtttttcattagctatcaattatctaatacatgat 32535957  T
Q  215 ggtacatcatcataaatgtgtg 236  Q
     ||||||||| |||||||||||    
T  32535958 tgtacatcattataaatgtgtg 32535979  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 18481387 - 18481332
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  18481387 tcattgcttttcattagctatcaaatctcggatacatgacggtacatcatcataaa 18481332  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 51976914 - 51976830
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaatgtgtga-ttagagtgagatggagctacc 258  Q
    |||||| ||||||||||||||||| | || ||||||||| |||||||||||||||| ||| ||  |||  |||||||||||||||    
T  51976914 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgggagctagcatgagatggagctacc 51976830  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 36685059 - 36685004
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  36685059 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaa 36685004  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 26390514 - 26390576
Alignment:
Q  168 aagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||||   ||||| ||||||||    
T  26390514 aagaaattcattgattttcattagctatcaactgtctaatacatgaccttacattatcataaa 26390576  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 8705877 - 8705811
Alignment:
Q  164 aggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||| ||| || ||||||||| | ||||| | ||  |||||||||||||||||||||||||    
T  8705877 aggaaagaaattcaatgcttttcattaaccatcaaatctcggatacatgatggtacatcatcataaa 8705811  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 9057764 - 9057698
Alignment:
Q  164 aggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||| ||| || ||||||||| | ||||| | ||  |||||||||||||||||||||||||    
T  9057764 aggaaagaaattcaatgcttttcattaaccatcaaatctcggatacatgatggtacatcatcataaa 9057698  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 25130979 - 25131039
Alignment:
Q  164 aggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcat 224  Q
    ||||||| || |||||||||||||||| || |||| |||| ||||||||| | ||||||||    
T  25130979 aggaaagtaattcattgtttttcattaactgtcaaatgtcaaatacatgacgatacatcat 25131039  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 45736613 - 45736565
Alignment:
Q  182 ttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    ||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  45736613 ttttcattagctatcaagtctcggatacatgacggtacatcatcataaa 45736565  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 12378565 - 12378620
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  12378565 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaa 12378620  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 41197313 - 41197368
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  41197313 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaa 41197368  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 30376373 - 30376439
Alignment:
Q  164 aggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||| |||||| ||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  30376373 aggaaaaaaattcattgcttttcattagctatcaagtctcggatacatgacggtacatcatcataaa 30376439  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 34905736 - 34905674
Alignment:
Q  168 aagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| |||||||||||||||||||||||| |||  |||| |||||||| ||||||| ||||    
T  34905736 aagaaattcattgtttttcattagctatcaaatgttcaatatatgatggtccatcatcgtaaa 34905674  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 36779353 - 36779413
Alignment:
Q  168 aagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcata 228  Q
    |||||| |||||||||||||||||||||||| | ||  |||||||| | ||||||||||||    
T  36779353 aagaaattcattgtttttcattagctatcaaatctcagatacatgacgatacatcatcata 36779413  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 39714989 - 39714923
Alignment:
Q  164 aggaaagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||| |||| |||||||||||  |||||||| | ||||| ||||  |||||||||||||||    
T  39714989 aggaaagaaattcatagtttttcattaaatatcaattatttaatatatgaccgtacatcatcataaa 39714923  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 24543367 - 24543312
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  24543367 tcattgtttttcattagctatcaagtctcggatacatgacggtacatcatcataaa 24543312  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 29894278 - 29894333
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  29894278 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaa 29894333  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 11351554 - 11351609
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  11351554 tcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaa 11351609  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 25396209 - 25396262
Alignment:
Q  170 gaaaatcattgtttttcattagctatcaat-tgtctaatacatgatggtacatca 223  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  25396209 gaaattcattgtttttcattagcta-caatgtgtctaatacatgatggtacatca 25396262  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 21515357 - 21515302
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||||||||||||||||| | ||  || ||||| ||||||||||||||||    
T  21515357 tcattgtttttcattagctatcaagtatcggatgcatgacggtacatcatcataaa 21515302  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 32988848 - 32988898
Alignment:
Q  180 gtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    ||||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  32988848 gtttttcattagctatcaagtttcagatacatgacggtacatcatcataaa 32988898  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 942847 - 942792
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||||||||||||||||||||| | ||  |||||||| ||||||||||| ||||    
T  942847 tcattgtttttcattagctatcaagtttcggatacatgacggtacatcatcgtaaa 942792  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 43989215 - 43989270
Alignment:
Q  175 tcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaa 230  Q
    |||||| ||||||||||||||||| | ||  |||||||| ||||||||||||||||    
T  43989215 tcattgcttttcattagctatcaagtctcggatacatgacggtacatcatcataaa 43989270  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 19315840 - 19315901
Alignment:
Q  168 aagaaaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataa 229  Q
    |||||| |||||| |||| |||||||||||| |||  ||||||||| ||||||| |||||||    
T  19315840 aagaaagtcattgctttttattagctatcaaatgttcaatacatgacggtacataatcataa 19315901  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 48563990 - 48564031
Alignment:
Q  182 ttttcattagctatcaattgtctaatacatgatggtacatca 223  Q
    |||||||||| |||||||| | ||||||||||||||||||||    
T  48563990 ttttcattagatatcaattatgtaatacatgatggtacatca 48564031  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 23820680 - 23820618
Alignment:
Q  172 aaatcattgtttttcattagctatcaattgtctaatacatgatggtacatcatcataaatgtg 234  Q
    ||||||||| ||||||||| ||||||| | ||  ||| |||| ||||||||||||||||||||    
T  23820680 aaatcattgcttttcattaactatcaagtctcggatatatgacggtacatcatcataaatgtg 23820618  T

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