View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16792_low_2 (Length: 709)

Name: NF16792_low_2
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16792_low_2
NF16792_low_2
[»] chr2 (7 HSPs)
chr2 (18-649)||(8337449-8338079)
chr2 (559-625)||(45472409-45472475)
chr2 (563-617)||(25272349-25272402)
chr2 (563-617)||(13295464-13295519)
chr2 (571-627)||(8266310-8266366)
chr2 (571-619)||(43893203-43893251)
chr2 (559-622)||(44274544-44274607)
[»] chr4 (12 HSPs)
chr4 (22-140)||(36100070-36100188)
chr4 (563-624)||(14351342-14351403)
chr4 (563-622)||(48860532-48860591)
chr4 (562-624)||(36688427-36688489)
chr4 (559-615)||(2254028-2254084)
chr4 (563-610)||(12596755-12596802)
chr4 (560-633)||(52281109-52281182)
chr4 (564-617)||(16578589-16578642)
chr4 (559-627)||(17657982-17658050)
chr4 (563-627)||(53176305-53176369)
chr4 (562-617)||(26636518-26636573)
chr4 (565-612)||(34937113-34937160)
[»] chr5 (8 HSPs)
chr5 (562-622)||(36864500-36864560)
chr5 (564-627)||(23420988-23421051)
chr5 (563-617)||(25776910-25776965)
chr5 (559-617)||(7313838-7313896)
chr5 (563-633)||(13356216-13356286)
chr5 (569-622)||(25358060-25358113)
chr5 (598-627)||(33652680-33652709)
chr5 (563-624)||(36897742-36897803)
[»] chr1 (8 HSPs)
chr1 (559-622)||(39940561-39940624)
chr1 (561-615)||(12750559-12750613)
chr1 (559-625)||(47446706-47446772)
chr1 (563-622)||(19580186-19580245)
chr1 (569-622)||(10256854-10256906)
chr1 (563-632)||(14214608-14214677)
chr1 (565-613)||(8243370-8243418)
chr1 (563-622)||(10256783-10256842)
[»] chr3 (4 HSPs)
chr3 (569-627)||(8256909-8256967)
chr3 (563-619)||(39836944-39837000)
chr3 (563-617)||(42681187-42681241)
chr3 (569-622)||(42787700-42787753)
[»] chr7 (8 HSPs)
chr7 (560-624)||(39960314-39960378)
chr7 (559-622)||(785627-785690)
chr7 (563-617)||(24934558-24934612)
chr7 (463-515)||(3106028-3106080)
chr7 (558-622)||(26824992-26825056)
chr7 (563-627)||(27554576-27554640)
chr7 (559-626)||(30138863-30138930)
chr7 (559-634)||(31319591-31319666)
[»] chr6 (1 HSPs)
chr6 (563-619)||(15718472-15718528)
[»] chr8 (7 HSPs)
chr8 (559-617)||(13841855-13841913)
chr8 (560-617)||(13841923-13841981)
chr8 (560-622)||(15037752-15037814)
chr8 (564-617)||(35781234-35781287)
chr8 (590-622)||(6883627-6883659)
chr8 (565-613)||(7286655-7286703)
chr8 (563-619)||(36307997-36308053)


Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 8338079 - 8337449
Alignment:
Q  18 aaatagacatgaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtgcat 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8338079 aaatagacataaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactaataacaatgtggtttgttactttgatgtgcat 8337980  T
Q  118 ctctttgttgcactctatatatatactaatgtacagtatcatcttct---aaagtgagggtcaatattatgtgtcatttaatgaaggaatggaaattaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8337979 ctctttgttgcactctatatatatactaatgtacagtatcatcttcttctaaagtgagggtcaatattatgtgtcatttaatgaaggaatagaaattaat 8337880  T
Q  215 attttctttttgactccaatgaatggcagaaattatattgtcta-tctttctgaaattaagtgaaaacatatgtcgatatgttttattacgagagtaagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8337879 attttctttttgactccaatgaatggcagaaattatattgtctagtctttctgaaattaagtgaaaacatatttcgatatgttttattacaagagtaagt 8337780  T
Q  314 actaaactttgtttgttctttaagagttttcttttgcaaaactctttaagaaaaacatcaaaattatatagcttagtcttgtttctaagagtggagaagt 413  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8337779 actaaactttgtttgttctttaagagttttcttttacaaaactctttaagaaaaacatcaaaattatatagcctagtcttgtttctaagagtggagaagt 8337680  T
Q  414 tgcattaaatggaaatgaaaatattgttattatatttactacacattttgatcactattataagcattaaaccat-ttttaagttcattcaataaatgat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8337679 tgcattaaatggaaatgaaaatattgttattatatttactacacatttcgatcactattataagcattaaaccattttttaagttcattcaataaatgat 8337580  T
Q  513 gtagacagcatattatatagacatcatacatcaattcatcatagacgactacatatatcatttattgaatgaactataaaagtaaatttttatttataat 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      |    
T  8337579 gtagacagcatattatatagacatcatacatcaattcatcatagacgactacatatatcatttattgaatgaactttaaaagtaaatttttat------t 8337486  T
Q  613 agtgatcggatggtgcatattaaagtttggtctagta 649  Q
    |||||||||||||||||||||||||||||||||||||    
T  8337485 agtgatcggatggtgcatattaaagtttggtctagta 8337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 559 - 625
Target Start/End: Complemental strand, 45472475 - 45472409
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatgg 625  Q
    ||||||||| ||||||||||||||||| |  ||||||||||||||| ||||||||||||||| ||||    
T  45472475 gactacatacatcatttattgaatgaatttaaaaagtaaatttttacttataatagtgatcgaatgg 45472409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 25272402 - 25272349
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    |||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||    
T  25272402 acatatattatttattgaacgaact-taaaagtaaaattttatttataatagtga 25272349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 617
Target Start/End: Original strand, 13295464 - 13295519
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaattttt-atttataatagtga 617  Q
    |||||||||||||||||||||||||  ||| || ||||||| ||||||||||||||    
T  13295464 acatatatcatttattgaatgaacttaaaatgtgaatttttgatttataatagtga 13295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 571 - 627
Target Start/End: Complemental strand, 8266366 - 8266310
Alignment:
Q  571 catttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 627  Q
    |||||| ||||||||||   ||| | ||||||||||||||||||||| |||||||||    
T  8266366 catttaatgaatgaacttagaaaatgaatttttatttataatagtgaccggatggtg 8266310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 571 - 619
Target Start/End: Original strand, 43893203 - 43893251
Alignment:
Q  571 catttattgaatgaactataaaagtaaatttttatttataatagtgatc 619  Q
    |||||||||||||||||   ||| | |||||||||||||||||||||||    
T  43893203 catttattgaatgaacttataaattgaatttttatttataatagtgatc 43893251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 559 - 622
Target Start/End: Complemental strand, 44274607 - 44274544
Alignment:
Q  559 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||||||||||||||||||||| ||| ||| || || |||| ||||||||||||| ||||    
T  44274607 gactacatatatcatttattgaatgaatcta-aaatgtcaacttttgtttataatagtgaccgga 44274544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 36100188 - 36100070
Alignment:
Q  22 agacatgaaaattgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtgcatctct 121  Q
    |||||||||||||||||||||||||||||||||| |||| |  | |||||| ||  | ||||| | |  || |||||||||||||| | ||||||||||     
T  36100188 agacatgaaaattgttaaggttgtcaagagaaaaaacaacgctctcattgtttccatggtactaacagaaacgtggtttgttacttggttgtgcatctca 36100089  T
Q  122 ttgttgcactctatatata 140  Q
    ||||||| |||||||||||    
T  36100088 ttgttgcgctctatatata 36100070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 624
Target Start/End: Original strand, 14351342 - 14351403
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 624  Q
    ||||||||||||||||||||||||   | || | ||||||||||||||||||||||||||||    
T  14351342 acatatatcatttattgaatgaacctaacaaatgaatttttatttataatagtgatcggatg 14351403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 622
Target Start/End: Complemental strand, 48860591 - 48860532
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||| ||||||||||||||||| |  |||||||||  ||||||||||||||||||||||    
T  48860591 acatacatcatttattgaatgaatttaaaaagtaaaaatttatttataatagtgatcgga 48860532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 36688427 - 36688489
Alignment:
Q  562 tacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 624  Q
    |||||||||||||||||||||||| |  |||||| || |||||||||||||| | ||||||||    
T  36688427 tacatatatcatttattgaatgaatttaaaaagtgaaattttatttataataataatcggatg 36688489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 615
Target Start/End: Original strand, 2254028 - 2254084
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagt 615  Q
    ||||||||||||||||||||||||||| |  |||| |||| |||| |||||||||||    
T  2254028 gactacatatatcatttattgaatgaatttaaaaaataaacttttgtttataatagt 2254084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 610
Target Start/End: Original strand, 12596755 - 12596802
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttata 610  Q
    ||||||||||||||||||||||||   |||||||||||||| ||||||    
T  12596755 acatatatcatttattgaatgaacctaaaaagtaaatttttgtttata 12596802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 633
Target Start/End: Complemental strand, 52281182 - 52281109
Alignment:
Q  560 actacatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggtgcatatt 633  Q
    |||||||| ||||||||||||||||| ||||||| | | ||||||  |||||||||||| ||||||||| |||||    
T  52281182 actacatacatcatttattgaatgaa-tataaaatgcatatttttgcttataatagtgaccggatggtgtatatt 52281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 617
Target Start/End: Original strand, 16578589 - 16578642
Alignment:
Q  564 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    |||| |||||||||||||||||||  ||| ||| ||||||| ||||||||||||    
T  16578589 catacatcatttattgaatgaacttaaaatgtagatttttacttataatagtga 16578642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 627
Target Start/End: Original strand, 17657982 - 17658050
Alignment:
Q  559 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcggatggtg 627  Q
    ||||||||||||||||||||||||||| ||| |||| |||| ||||| |||||| | |||||| ||||||    
T  17657982 gactacatatatcatttattgaatgaatcta-aaaaataaagttttacttataacaatgatcgaatggtg 17658050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 627
Target Start/End: Complemental strand, 53176369 - 53176305
Alignment:
Q  563 acatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggtg 627  Q
    ||||| |||||||| |||||||| ||||||| || |||||||| ||||||||||||||||| ||||    
T  53176369 acatacatcatttaatgaatgaa-tataaaatgttaatttttacttataatagtgatcggagggtg 53176305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 617
Target Start/End: Original strand, 26636518 - 26636573
Alignment:
Q  562 tacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 617  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  26636518 tacatacatcatttattgaatgaatcta-aaaaataaatttttacttataatagtga 26636573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 612
Target Start/End: Complemental strand, 34937160 - 34937113
Alignment:
Q  565 atatatcatttattgaatgaactataaaa-gtaaatttttatttataat 612  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  34937160 atatatcatttattgaatgaa-tataaaatgtaaatttttgtttataat 34937113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 622
Target Start/End: Original strand, 36864500 - 36864560
Alignment:
Q  562 tacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 622  Q
    |||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||    
T  36864500 tacatatatcatttattgaatgaatcta-aaaagtgaacttttatttataatagtgatcgga 36864560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 564 - 627
Target Start/End: Original strand, 23420988 - 23421051
Alignment:
Q  564 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 627  Q
    |||| |||||||||||||||||||  ||||||||| |||| ||| || ||||||||||||||||    
T  23420988 catacatcatttattgaatgaacttaaaaagtaaacttttgtttctattagtgatcggatggtg 23421051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 25776965 - 25776910
Alignment:
Q  563 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 617  Q
    ||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||    
T  25776965 acatatatcatttattgaatgaacctaaaaaaataaaattttatttataatagtga 25776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 617
Target Start/End: Complemental strand, 7313896 - 7313838
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    ||||||||||||||||||||||||||| |  |||||| || ||||| |||||| |||||    
T  7313896 gactacatatatcatttattgaatgaatttaaaaagtgaacttttacttataaaagtga 7313838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 633
Target Start/End: Original strand, 13356216 - 13356286
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtgcatatt 633  Q
    ||||| |||||||||||||||||||  ||||||| ||||||  |||||||| ||| |||| |||| |||||    
T  13356216 acatacatcatttattgaatgaacttaaaaagtagatttttgcttataataatgaccggagggtgtatatt 13356286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 25358113 - 25358060
Alignment:
Q  569 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    |||||||||||||||||   ||||| |||||||||| |||||||||||| ||||    
T  25358113 atcatttattgaatgaatcttaaaaataaatttttacttataatagtgaccgga 25358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 627
Target Start/End: Original strand, 33652680 - 33652709
Alignment:
Q  598 atttttatttataatagtgatcggatggtg 627  Q
    ||||||||||||||||||||||||||||||    
T  33652680 atttttatttataatagtgatcggatggtg 33652709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 624
Target Start/End: Complemental strand, 36897803 - 36897742
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 624  Q
    ||||| |||||||||| |||||| |  ||| ||||||||||| |||||||||| ||||||||    
T  36897803 acatacatcatttatttaatgaatttaaaatgtaaatttttacttataatagtaatcggatg 36897742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 622
Target Start/End: Original strand, 39940561 - 39940624
Alignment:
Q  559 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||| || |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  39940561 gactacatacattatttattgaatgaatcta-aaaagtaaatttttacttataatagtgatcgga 39940624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 615
Target Start/End: Original strand, 12750559 - 12750613
Alignment:
Q  561 ctacatatatcatttattgaatgaactataaaagtaaatttttatttataatagt 615  Q
    ||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  12750559 ctacatacatcatttattgaatgaatttaaaaagtcaatttttatttataatagt 12750613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 625
Target Start/End: Original strand, 47446706 - 47446772
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatgg 625  Q
    ||||||||| ||||||||||||||||| |  |||||| | |||||| |||||||||||| |||||||    
T  47446706 gactacatacatcatttattgaatgaatttaaaaagtgagtttttacttataatagtgaccggatgg 47446772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 622
Target Start/End: Complemental strand, 19580245 - 19580186
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||| ||||||||||||||||| | ||||||| |||||||  ||||||| |||||||||    
T  19580245 acatacatcatttattgaatgaattttaaaagtcaatttttgcttataatcgtgatcgga 19580186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 622
Target Start/End: Original strand, 10256854 - 10256906
Alignment:
Q  569 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||||||||||||| ||||||| || ||||  |||||||||||||||||    
T  10256854 atcatttattgaatgaact-taaaagttaaatttttcttataatagtgatcgga 10256906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 632
Target Start/End: Original strand, 14214608 - 14214677
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtgcatat 632  Q
    ||||| ||||||||||||||||||   |||||||| |||||  |||||||||||| |||| |||| ||||    
T  14214608 acatacatcatttattgaatgaacctaaaaagtaagtttttgcttataatagtgaccggagggtgtatat 14214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 613
Target Start/End: Complemental strand, 8243418 - 8243370
Alignment:
Q  565 atatatcatttattgaatgaactataaaagtaaatttttatttataata 613  Q
    |||||||| ||||| ||||||| | ||| ||||||||||||||||||||    
T  8243418 atatatcacttattaaatgaaccaaaaatgtaaatttttatttataata 8243370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 622
Target Start/End: Complemental strand, 10256842 - 10256783
Alignment:
Q  563 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||  |||||||||||||||||    
T  10256842 acatacatcatttattgaatgaatcta-aaaagtgaattttttcttataatagtgatcgga 10256783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 627
Target Start/End: Original strand, 8256909 - 8256967
Alignment:
Q  569 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 627  Q
    ||||||||||||||||| |  |||||| ||||||||||||||||| |||||||| ||||    
T  8256909 atcatttattgaatgaatttaaaaagtgaatttttatttataatactgatcggagggtg 8256967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 619
Target Start/End: Original strand, 39836944 - 39837000
Alignment:
Q  563 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatc 619  Q
    ||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  39836944 acatacatcatttattgaatgaatcta-aaaagtaaacttttatttataatagtgatc 39837000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 42681241 - 42681187
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    |||||||||||||||| |||||| |  ||| ||||||||||| ||||||||||||    
T  42681241 acatatatcatttattaaatgaatttaaaatgtaaatttttacttataatagtga 42681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 622
Target Start/End: Original strand, 42787700 - 42787753
Alignment:
Q  569 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||||||||||||   |||| | ||||||| ||||||||||||||||||    
T  42787700 atcatttattgaatgaacctaaaaaatgaatttttgtttataatagtgatcgga 42787753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 624
Target Start/End: Original strand, 39960314 - 39960378
Alignment:
Q  560 actacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 624  Q
    ||||||||||||||| |||||||||| |  |||  ||||||||||||||||| ||| ||||||||    
T  39960314 actacatatatcattaattgaatgaatttaaaatataaatttttatttataacagtaatcggatg 39960378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 622
Target Start/End: Original strand, 785627 - 785690
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||||||||||||||||||||||   ||| || |||||||  |||||||||||| ||||    
T  785627 gactacatatatcatttattgaatgaacgtaaaatgtgaatttttccttataatagtgaccgga 785690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 24934612 - 24934558
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    ||||| ||||||||||||||||||   ||| ||||||||| ||||||||||||||    
T  24934612 acatacatcatttattgaatgaacctaaaatgtaaattttgatttataatagtga 24934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 3106080 - 3106028
Alignment:
Q  463 gatcactattataagcattaaaccatttttaagttcattcaataaatgatgta 515  Q
    |||||||||||||| ||  |||| | ||||| |||||||||||||||||||||    
T  3106080 gatcactattataaacaaaaaacaacttttaggttcattcaataaatgatgta 3106028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 558 - 622
Target Start/End: Original strand, 26824992 - 26825056
Alignment:
Q  558 cgactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    ||||||||||| ||||||| |||||||| |  ||||  ||||||||| ||||| |||||||||||    
T  26824992 cgactacatatgtcatttaatgaatgaatttaaaaatcaaatttttacttatattagtgatcgga 26825056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 627
Target Start/End: Original strand, 27554576 - 27554640
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 627  Q
    ||||| |||||| |||||||| | | |||||||||||||||  ||||| ||||||||||| ||||    
T  27554576 acatacatcattaattgaatgtattttaaaagtaaatttttgcttatattagtgatcggagggtg 27554640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 559 - 626
Target Start/End: Original strand, 30138863 - 30138930
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggt 626  Q
    ||||| ||| |||||| |||||||||| | ||||| ||||||||||| |||||| ||||||||||||||    
T  30138863 gactatatacatcattaattgaatgaa-tctaaaatgtaaatttttacttataacagtgatcggatggt 30138930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 559 - 634
Target Start/End: Original strand, 31319591 - 31319666
Alignment:
Q  559 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcggatggtgcatatta 634  Q
    ||||||||| ||||||| ||||||||| ||| |||| || ||||||  ||||||||||||||||| |||| ||||||    
T  31319591 gactacatacatcattttttgaatgaatctaaaaaa-tatatttttccttataatagtgatcggagggtgtatatta 31319666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 619
Target Start/End: Original strand, 15718472 - 15718528
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatc 619  Q
    ||||| ||||||||||||||||| | ||||||| |||||||  ||||||||||||||    
T  15718472 acatacatcatttattgaatgaattttaaaagtgaatttttgcttataatagtgatc 15718528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 617
Target Start/End: Complemental strand, 13841913 - 13841855
Alignment:
Q  559 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    ||||| ||| ||||||||||||||||| |  ||||||||||||||  ||||||||||||    
T  13841913 gactaaatacatcatttattgaatgaatttaaaaagtaaatttttgcttataatagtga 13841855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 617
Target Start/End: Original strand, 13841923 - 13841981
Alignment:
Q  560 actacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 617  Q
    |||||||| ||||||||||||||||| ||| ||| || ||| |||||||||||||||||    
T  13841923 actacatacatcatttattgaatgaacctaaaaaggtcaatatttatttataatagtga 13841981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 622
Target Start/End: Complemental strand, 15037814 - 15037752
Alignment:
Q  560 actacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 622  Q
    |||||||| ||||||||||||||||||   ||||||| |||||| ||||||||| ||| ||||    
T  15037814 actacatacatcatttattgaatgaacctaaaaagtagatttttgtttataatactgaccgga 15037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 617
Target Start/End: Complemental strand, 35781287 - 35781234
Alignment:
Q  564 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 617  Q
    |||||||||||||||||||||||   |||| |||| |||| |||||||||||||    
T  35781287 catatatcatttattgaatgaacctaaaaaataaaattttgtttataatagtga 35781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 622
Target Start/End: Complemental strand, 6883659 - 6883627
Alignment:
Q  590 aaaagtaaatttttatttataatagtgatcgga 622  Q
    |||||||| ||||||||||||||||||||||||    
T  6883659 aaaagtaactttttatttataatagtgatcgga 6883627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 7286655 - 7286703
Alignment:
Q  565 atatatcatttattgaatgaactataaaagtaaatttttatttataata 613  Q
    ||||||||||||||||||||||   |||| || ||||||||||||||||    
T  7286655 atatatcatttattgaatgaacctaaaaaatatatttttatttataata 7286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 619
Target Start/End: Complemental strand, 36308053 - 36307997
Alignment:
Q  563 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatc 619  Q
    ||||| ||||||||||||||||||   |||| | || ||||||||||||||||||||    
T  36308053 acatacatcatttattgaatgaacctaaaaaatcaacttttatttataatagtgatc 36307997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University