View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_21 (Length: 250)
Name: NF16792_low_21
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 38592705 - 38592483
Alignment:
| Q |
13 |
gagagtgcaagagagactgtgtgtagcattgctcttatgaattaaagatgtataaacgaagtgaaattgaagtagtttctaaaaccaaacttgtatggat |
112 |
Q |
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| T |
38592705 |
gagagtgcaagagagactgtgcgtagcattgctcttatgaattaaagatgtataaaagaagtgaaattgaagtagtttctaaaacctaacttgtatggat |
38592606 |
T |
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| Q |
113 |
cttgtggcgatttctggaaagatgaagaaggtggagatttttgtatgcatcattgacacaggaagaatgctgaagtgggagtagaaatttgtaaataaat |
212 |
Q |
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| T |
38592605 |
cttgtggcgatttctggaaagatgaagaaggtggagattttcgtatgcatcattgacacaggaagaatgctgaagt-ggagtagaaatttgtaaataaat |
38592507 |
T |
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| Q |
213 |
aagagagaagggaggaaggaattg |
236 |
Q |
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| T |
38592506 |
aagagagaagggaggaaggaattg |
38592483 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 39033413 - 39033355
Alignment:
| Q |
70 |
gaagtgaaattgaagtagtttctaaaaccaaacttgtatggatcttgtggcgatttctg |
128 |
Q |
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| T |
39033413 |
gaagtgaaattgaagtagtttgtaaaacttaactttgatggatcttgtggcgatttctg |
39033355 |
T |
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