View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_22 (Length: 249)
Name: NF16792_low_22
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_22 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 1931257 - 1931477
Alignment:
| Q |
13 |
aatatatccatctaccgctccataatcaggaggcatcgaaactactttatatgtttcgtcccccaaatgaagagaaacgatacaatgttgaagtttgtta |
112 |
Q |
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| T |
1931257 |
aatatatccatctaccgctccataatcaggaggcatctaaactactttatatgtttcctcccccaaatgaagagaaacgatacaatgttgaagtttgtta |
1931356 |
T |
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| Q |
113 |
tcatagtctttaacaaccaaccaattaatcgtaccacctacacattttcccactacttgccaagaattaaaaccaaaggggaatttttgaatgcttttcc |
212 |
Q |
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| T |
1931357 |
tcatagtctttaacaaccaaccaattaatcgtaccacttacacattttcccactacttgccaagaattaaaaccaaaggggaatttttgaatgcttttcc |
1931456 |
T |
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| Q |
213 |
aagaattggtgtccaaagtat |
233 |
Q |
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| T |
1931457 |
aagaattggtgtccaaagtat |
1931477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 1907287 - 1907446
Alignment:
| Q |
74 |
cccaaatgaagagaaacgatacaatgttgaagtttgttatcatagtctttaacaaccaaccaattaatcgtaccacctacacattttcccactacttgcc |
173 |
Q |
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| T |
1907287 |
cccaaatcaagagaaacaatacaatcttgaaatttgttatcgtactctctagcaaccaaccaattgatggtgccactcacagattttcccaaaaattgca |
1907386 |
T |
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| Q |
174 |
aagaattaaaaccaaaggggaatttttgaatgcttttccaagaattggtgtccaaagtat |
233 |
Q |
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| T |
1907387 |
aaggaacacaaccaaaaggaaattttggaatggttttccaagaattggtgcccaaagtat |
1907446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 1897841 - 1897997
Alignment:
| Q |
74 |
cccaaatgaagagaaacgatacaatgttgaagtttgttatcatagtctttaacaaccaaccaattaatcgtaccacctacacattttcccactacttgcc |
173 |
Q |
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| T |
1897841 |
cccaaatcaagagaaacaatacaatcttgaaatttgttatcatactatctagcaaccaaccaattgatggtgccactcacagattttcccaaaaattgca |
1897940 |
T |
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| Q |
174 |
aagaattaaaaccaaaggggaatttttgaatgcttttccaagaattggtgtccaaag |
230 |
Q |
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| T |
1897941 |
aaggaacacaaccaaaaggaaattttggaatggttttccaagaattggtgcccaaag |
1897997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 2931787 - 2931640
Alignment:
| Q |
86 |
gaaacgatacaatgttgaagtttgttatcatagtctttaacaaccaaccaattaatcgtaccacctacacattttcccactacttgccaagaattaaaac |
185 |
Q |
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| T |
2931787 |
gaaacaatacaatcttgaaatttgttatcttactttctagcaaccaaccaattgatggtgccactcacagattttcccaaaaattgcaaaggaacacaac |
2931688 |
T |
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| Q |
186 |
caaaggggaatttttgaatgcttttccaagaattggtgtccaaagtat |
233 |
Q |
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|||| || |||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
2931687 |
caaaaggaaattttggaatggttttccaagaattggtgcccaaagtat |
2931640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 1937177 - 1937303
Alignment:
| Q |
107 |
ttgttatcatagtctttaacaaccaaccaattaatcgtaccacctacacattttcccactacttgccaagaattaaaaccaaaggggaatttttgaatgc |
206 |
Q |
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||||||||||| |||||| ||||||||||||| | ||| |||| ||| |||||||| | |||| ||| | ||||||| |||| |||||||||| |
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| T |
1937177 |
ttgttatcatactctttagcaaccaaccaattgagcgtgccactaacaaattttcccgaaatttgcaaagcaacgcaaccaaaagggatattttgaatgc |
1937276 |
T |
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| Q |
207 |
ttttccaagaattggtgtccaaagtat |
233 |
Q |
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| T |
1937277 |
ttttccaacaattggtgcccaaagtat |
1937303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 1891270 - 1891375
Alignment:
| Q |
128 |
accaaccaattaatcgtaccacctacacattttcccactacttgccaagaattaaaaccaaaggggaatttttgaatgcttttccaagaattggtgtcca |
227 |
Q |
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||||||||||| ||||| |||| ||| ||||||||| | |||| ||| | | | ||||| || |||||||||||| ||||||||||||||||| ||| |
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| T |
1891270 |
accaaccaattgatcgtgccactcacaaattttcccaaaagttgcaaaggaacacagccaaaaggaaatttttgaatggttttccaagaattggtgccca |
1891369 |
T |
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| Q |
228 |
aagtat |
233 |
Q |
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| T |
1891370 |
aagtat |
1891375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 1053 - 1102
Alignment:
| Q |
184 |
accaaaggggaatttttgaatgcttttccaagaattggtgtccaaagtat |
233 |
Q |
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| T |
1053 |
accaaaagggaattcttgaatgcttttccaaaaattggtacccaaagtat |
1102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 41973745 - 41973794
Alignment:
| Q |
184 |
accaaaggggaatttttgaatgcttttccaagaattggtgtccaaagtat |
233 |
Q |
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| T |
41973745 |
accaaaagggaattcttgaatgcttttccaaaaattggtacccaaagtat |
41973794 |
T |
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