View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16792_low_27 (Length: 236)

Name: NF16792_low_27
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16792_low_27
NF16792_low_27
[»] chr8 (4 HSPs)
chr8 (16-229)||(14839083-14839296)
chr8 (69-229)||(43228102-43228262)
chr8 (16-80)||(43228016-43228080)
chr8 (24-74)||(38853658-38853708)
[»] chr7 (1 HSPs)
chr7 (16-229)||(27962394-27962607)
[»] chr2 (5 HSPs)
chr2 (64-229)||(24455861-24456026)
chr2 (64-154)||(1615142-1615232)
chr2 (16-89)||(24455782-24455853)
chr2 (192-229)||(38251600-38251637)
chr2 (192-229)||(43157905-43157942)
[»] chr3 (4 HSPs)
chr3 (76-229)||(49234341-49234496)
chr3 (64-150)||(49233851-49233937)
chr3 (37-89)||(49233945-49233997)
chr3 (16-73)||(49234533-49234588)
[»] chr1 (5 HSPs)
chr1 (18-73)||(25433516-25433571)
chr1 (64-142)||(50862540-50862618)
chr1 (192-229)||(11475329-11475366)
chr1 (192-229)||(11503369-11503406)
chr1 (37-89)||(50862480-50862532)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 14839083 - 14839296
Alignment:
Q  16 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcatagtttagagctggttttcagcatgtggactaatgta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  14839083 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcgacatagtttagagctggttttcagcatatggactaatgta 14839182  T
Q  116 atgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncctccctacgtactgatttatctctatgttccagctgcaacatatcggtt 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||       ||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  14839183 atgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtctctgtgttccagctgcaacatatcggtt 14839282  T
Q  216 ttgttttcttctct 229  Q
    || |||||||||||    
T  14839283 ttattttcttctct 14839296  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 43228102 - 43228262
Alignment:
Q  69 attttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncct 168  Q
    |||||| ||||| ||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||| | |||||| || |||| | | ||        |||    
T  43228102 attttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcct 43228201  T
Q  169 ccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 229  Q
    |||| ||| ||||||| ||||| ||||||||||||||||||||||||||  ||||||||||    
T  43228202 ccctgcgttctgatttgtctctgtgttccagctgcaacatatcggttttactttcttctct 43228262  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 43228016 - 43228080
Alignment:
Q  16 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcata 80  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  43228016 ttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttctgcata 43228080  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 38853708 - 38853658
Alignment:
Q  24 atattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc 74  Q
    ||||||||||||||| |||||||||||| |||  |||||||||||||||||    
T  38853708 atattcagatgtttgcgcttaactattcggagtgggttcaaggtaattttc 38853658  T

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Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 27962607 - 27962394
Alignment:
Q  16 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcatagtttagagctggttttcagcatgtggactaatgta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  27962607 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcgacatagtttagagctggttttcagcatatggactaatgta 27962508  T
Q  116 atgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncctccctacgtactgatttatctctatgttccagctgcaacatatcggtt 215  Q
    ||||||| |||||||||||||||||||||||||||||||||||       ||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  27962507 atgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtctctgtgttccagctgcaacatatcggtt 27962408  T
Q  216 ttgttttcttctct 229  Q
    || |||||||||||    
T  27962407 ttattttcttctct 27962394  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 24455861 - 24456026
Alignment:
Q  64 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnn 163  Q
    |||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||| ||          
T  24455861 aggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtatttt 24455960  T
Q  164 nncctccctacgtactgatttatctctatgttccagctgcaacatatcggttttgttttcttctct 229  Q
      |||||||| || ||||||| ||||| || |||||||||| |||||||||||| |||||||||||    
T  24455961 ttcctccctatgttctgatttttctctgtggtccagctgcaccatatcggttttattttcttctct 24456026  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 1615232 - 1615142
Alignment:
Q  64 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtag 154  Q
    |||| |||||| ||||| ||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| |||||| ||||    
T  1615232 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtag 1615142  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 24455782 - 24455853
Alignment:
Q  16 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcggcatagtttagagc 89  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  24455782 ttattttcatatacagatgt--gtgcttaactattcagagctggttcaaggtaattttctgcataatttggagc 24455853  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 38251637 - 38251600
Alignment:
Q  192 tgttccagctgcaacatatcggttttgttttcttctct 229  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38251637 tgttccagctgcaacatattggttttgttttcttctct 38251600  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 43157905 - 43157942
Alignment:
Q  192 tgttccagctgcaacatatcggttttgttttcttctct 229  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  43157905 tgttccagctgcaacatattggttttgttttcttctct 43157942  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 49234496 - 49234341
Alignment:
Q  76 gcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctacgtagcggannnnnnncctccctacg 175  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||| ||        |||||||  |    
T  49234496 gcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattttttcctccctgtg 49234397  T
Q  176 tactgatttatc--tctatgttccagctgcaacatatcggttttgttttcttctct 229  Q
    | ||||||| ||  | | ||||||||||||||||||| ||||||  ||||||||||    
T  49234396 ttctgatttgtctatttgtgttccagctgcaacatattggttttaatttcttctct 49234341  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 49233937 - 49233851
Alignment:
Q  64 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgcacctgctac 150  Q
    |||| |||||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||||    
T  49233937 aggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgctac 49233851  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 49233997 - 49233945
Alignment:
Q  37 tgtgcttaactattcagagctggttcaaggtaattttcggcatagtttagagc 89  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  49233997 tgtgcttaactattcagagctggttcaaggtaattttctgcataatttggagc 49233945  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 49234588 - 49234533
Alignment:
Q  16 ttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaatttt 73  Q
    |||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||    
T  49234588 ttattttcatatccagatgt--gtgcttaattattcagagctggttcaaggtaatttt 49234533  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25433516 - 25433571
Alignment:
Q  18 attttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaatttt 73  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  25433516 attttcatattcagatgtttgcgcttaactattcggagttggttcaaggtaatttt 25433571  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 50862540 - 50862618
Alignment:
Q  64 aggtaattttcggcatagtttagagctggttttcagcatgtggactaatgtaatgcagcagcggtgttttggtactgca 142  Q
    |||| |||||| ||||| |||||||||| ||||| ||||||||||||||||| || | ||||  || ||||||||||||    
T  50862540 aggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgca 50862618  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 11475329 - 11475366
Alignment:
Q  192 tgttccagctgcaacatatcggttttgttttcttctct 229  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11475329 tgttccagctgcaacatattggttttgttttcttctct 11475366  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 11503369 - 11503406
Alignment:
Q  192 tgttccagctgcaacatatcggttttgttttcttctct 229  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11503369 tgttccagctgcaacatattggttttgttttcttctct 11503406  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 50862480 - 50862532
Alignment:
Q  37 tgtgcttaactattcagagctggttcaaggtaattttcggcatagtttagagc 89  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||| ||| ||||    
T  50862480 tgtgcttatctattcagagctggttcaaggtagttttctgcataatttggagc 50862532  T

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