View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16792_low_3 (Length: 594)

Name: NF16792_low_3
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16792_low_3
NF16792_low_3
[»] chr8 (4 HSPs)
chr8 (197-512)||(27267872-27268187)
chr8 (197-512)||(6579297-6579612)
chr8 (197-528)||(12664010-12664341)
chr8 (198-318)||(27005048-27005167)
[»] chr4 (3 HSPs)
chr4 (197-512)||(29710944-29711259)
chr4 (197-350)||(1690173-1690329)
chr4 (198-318)||(35536076-35536195)
[»] chr6 (1 HSPs)
chr6 (212-350)||(16484195-16484333)
[»] chr5 (2 HSPs)
chr5 (212-350)||(21818577-21818715)
chr5 (285-357)||(22008826-22008898)
[»] chr1 (1 HSPs)
chr1 (27-159)||(36676037-36676172)
[»] chr7 (4 HSPs)
chr7 (292-392)||(9253070-9253170)
chr7 (284-392)||(9317071-9317179)
chr7 (327-500)||(37276154-37276327)
chr7 (66-147)||(46922039-46922120)
[»] scaffold0194 (1 HSPs)
scaffold0194 (111-144)||(26548-26581)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 197 - 512
Target Start/End: Complemental strand, 27268187 - 27267872
Alignment:
Q  197 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 296  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 27268088  T
Q  297 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 396  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||     
T  27268087 acttacttgaaagaccaaaatcgaaccgtcacagttacattctatttagttttatgagaatccaatggcacaacctctggatataactgttacggcttcc 27267988  T
Q  397 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 496  Q
    || |||||||||||||||| || ||||||||||||||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  27267987 tacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacgacgaattcgcacc 27267888  T
Q  497 tttcattgcttcaatc 512  Q
    ||||||||||||||||    
T  27267887 tttcattgcttcaatc 27267872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 197 - 512
Target Start/End: Original strand, 6579297 - 6579612
Alignment:
Q  197 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 296  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 6579396  T
Q  297 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 396  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||     
T  6579397 acttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatgacacaacctctagatataactgttacggcttcc 6579496  T
Q  397 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 496  Q
    || ||||||||||| |||| || ||||||||||||||||||  | |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  6579497 tacgcattgacgaatacgcaggtgaacttggagcgtgattggagactccataaaaccatttagatgacgaagttgttaaagatgacggcgaattcgcacc 6579596  T
Q  497 tttcattgcttcaatc 512  Q
    |||||| |||||||||    
T  6579597 tttcatagcttcaatc 6579612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 197 - 528
Target Start/End: Original strand, 12664010 - 12664341
Alignment:
Q  197 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 296  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||  |||||||||||||||  |||||||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttcatgacacaaaacacaatcgaaaaattcacaatc 12664109  T
Q  297 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 396  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||     
T  12664110 acttacttgaaataccaaaatcgaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacctctagataaaactgttacggtttct 12664209  T
Q  397 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 496  Q
    || |||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||  ||||||||| ||||||||  | ||||| ||||    
T  12664210 tacgcatcgacgaagacgccggcgaacttggagcgtgattggaggctccataaaaccatttagatgatgaagttgttaaagatgacaacaaattcacacc 12664309  T
Q  497 tttcattgcttcaatcaatctgaatcattttg 528  Q
    ||||  ||||| |||| |||| ||||||||||    
T  12664310 tttcgctgcttaaatcgatctaaatcattttg 12664341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 27005048 - 27005167
Alignment:
Q  198 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 297  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||  ||||||| ||||||||||||| |||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttcatgacacaaa-cacaatcacaaaaatcacaatca 27005146  T
Q  298 cttacttgaaagaccaaaatc 318  Q
    |||||||||||||||||||||    
T  27005147 cttacttgaaagaccaaaatc 27005167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 197 - 512
Target Start/End: Original strand, 29710944 - 29711259
Alignment:
Q  197 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 296  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 29711043  T
Q  297 acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcg 396  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||     
T  29711044 acttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatggtacaacctctagatataactgttacggcttcc 29711143  T
Q  397 tatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacc 496  Q
    || |||||||||||||||| || ||||||||||||||||||  |||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||    
T  29711144 tacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacagcgaattcgcacc 29711243  T
Q  497 tttcattgcttcaatc 512  Q
    |||||| |||||||||    
T  29711244 tttcatagcttcaatc 29711259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 197 - 350
Target Start/End: Complemental strand, 1690329 - 1690173
Alignment:
Q  197 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacac---aatcacaaaattcaca 293  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  ||||||||||    || |||||||||||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattcatgacacaaaacaacagaaccacaaaattcaca 1690230  T
Q  294 atcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagtttta 350  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  1690229 atcacttacttgaaaggccaaaatcgaaccgtcacagttacattctctttagtttta 1690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 35536195 - 35536076
Alignment:
Q  198 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 297  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||   |||||||  ||||||| ||||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgatggttcatgacacaaa-cacaatcacaaaaatcacaatca 35536097  T
Q  298 cttacttgaaagaccaaaatc 318  Q
    |||||||||||||||||||||    
T  35536096 cttacttgaaagaccaaaatc 35536076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 16484333 - 16484195
Alignment:
Q  212 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 311  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 16484234  T
Q  312 caaaatcaaaccgtcacagttacattctctttagtttta 350  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  16484233 caaaatcgaaccgtcacagttacattctctttagtttta 16484195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 21818577 - 21818715
Alignment:
Q  212 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 311  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 21818676  T
Q  312 caaaatcaaaccgtcacagttacattctctttagtttta 350  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  21818677 caaaatcgaaccgtcacagttacattctctttagtttta 21818715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 22008826 - 22008898
Alignment:
Q  285 aaattcacaatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaat 357  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||||||||||||||||||||||||    
T  22008826 aaattcacaatcacttacttcaaataccgaaaccaaaccgacacaattacattctctttagttttatgagaat 22008898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 36676037 - 36676172
Alignment:
Q  27 gatccaccagcatcatcagatttcacctctc---ctttcctaacaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaa 123  Q
    ||||||||||| ||||||||||||||| |||   ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  36676037 gatccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaa 36676136  T
Q  124 ttatagaagcttgatcaccctgcattcaccaacaac 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  36676137 ttatagaagcttgatcaccctgcattcaccaacaac 36676172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 9253170 - 9253070
Alignment:
Q  292 caatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacgg 391  Q
    ||||||||||||||| ||||| |||   ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9253170 caatcacttacttgatagaccgaaactgaaccgtcacagtttcattctctttagttttatgagaatccaatggtacaacttctagataaaactgttacgg 9253071  T
Q  392 c 392  Q
    |    
T  9253070 c 9253070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 9317071 - 9317179
Alignment:
Q  284 aaaattcacaatcacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaac 383  Q
    |||||| |||||||||||||||| ||||| |||   ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  9317071 aaaattgacaatcacttacttgatagaccgaaacttaaccgtcacagtttcattctctttagttttatgagaatccaatagtacaacttctagataaaac 9317170  T
Q  384 tgttacggc 392  Q
    |||||||||    
T  9317171 tgttacggc 9317179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 327 - 500
Target Start/End: Original strand, 37276154 - 37276327
Alignment:
Q  327 acagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcgtatgcattgacgaagacgccggcgaacttg 426  Q
    |||||||||||||||||||| || ||||||||||| ||||||  |||| |||||||||| | ||||||  |  ||| |||||| |||||||||||||| |    
T  37276154 acagttacattctctttagtcttttgagaatccaacggcacagtttctggataaaactgctgcggcttactccgcactgacgacgacgccggcgaactcg 37276253  T
Q  427 gagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacctttc 500  Q
    |||| | ||||   | | | ||||||  |||||||| |||||||||||||||||| ||||||||  ||||||||    
T  37276254 gagcatcattggaagtttcgtgaaactgtttagatgacgaagttgttgaagatgaaggcgaattgacacctttc 37276327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 46922120 - 46922039
Alignment:
Q  66 acaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 147  Q
    ||||||| ||| || | ||| ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922120 acaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  111 atagcccctccaattatagaagcttgatcaccct 144  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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