View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_31 (Length: 226)
Name: NF16792_low_31
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21160899 - 21161101
Alignment:
| Q |
1 |
caaaaagacagatatgtgatcatgaaattgcagggtgttttagcaatagtatatgaagggatgtcatatcacaaagattaacgtgagatagcagacaaca |
100 |
Q |
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| T |
21160899 |
caaaaagacagatatgtgatcatgaaattgcagggtgttttagcaatagtatatgaagggatgtcatatcacaaagattaacgtgagatagcagacaaca |
21160998 |
T |
|
| Q |
101 |
tatatataaatggtaacttgtcaatcaaggcaaaagtaccaagaaattgctttcaaaagtgtcaacagcaacaaatcattaccattactttgaccatcct |
200 |
Q |
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| T |
21160999 |
tatatataaatggtaacttgtcaatcaaggcaaaaggaccaagaaattgctttcaaaagtgtcaacagcaacaaatcattaccattactttgaccatcct |
21161098 |
T |
|
| Q |
201 |
atg |
203 |
Q |
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||| |
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| T |
21161099 |
atg |
21161101 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4456793 - 4456839
Alignment:
| Q |
1 |
caaaaagacagatatgtgatcatgaaattgcagggtgttttagcaata |
48 |
Q |
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| T |
4456793 |
caaaaagacagatatgtgatcatgaaattgcaggg-attttagcaata |
4456839 |
T |
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