View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_35 (Length: 216)
Name: NF16792_low_35
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 55664341 - 55664526
Alignment:
| Q |
14 |
cagagaactaaatatatcaccaacaaagctacaatggtaactatcaccacatctccatgttaaacaacgtgtacctttgattaatatgcatgtgataccc |
113 |
Q |
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| T |
55664341 |
cagagaactaaatatatcaccaacaaagctacaatggtaactatcaccacatctccatgttaaacaacgtgtacctttgattaatatgcatgtgataccc |
55664440 |
T |
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| Q |
114 |
aaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagtat |
199 |
Q |
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| T |
55664441 |
aaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagtat |
55664526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 52984695 - 52984786
Alignment:
| Q |
108 |
atacccaaacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagtat |
199 |
Q |
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| T |
52984695 |
atacccaaacatcaaactagaagaaacgcataagcaataaagaaattaacattgcactttattaaacatgatatttaacatcatttgagtat |
52984786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 55636661 - 55636479
Alignment:
| Q |
18 |
gaactaaatatatcaccaacaaagctacaatggtaactat--caccacatctccatgttaaacaacgtgtac-ctttgattaatatgcatgtgataccca |
114 |
Q |
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| T |
55636661 |
gaactgaatatatcatcaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatgccca |
55636562 |
T |
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| Q |
115 |
aacatcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagt |
197 |
Q |
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| T |
55636561 |
aacatcaaacatgaagaacaacataagcaataaagaaattaacattgcattttattaaatgtgatattcaacatcatttgagt |
55636479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 54628338 - 54628234
Alignment:
| Q |
97 |
atatgcatgtgatacccaaacatca---aacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcattt |
193 |
Q |
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| T |
54628338 |
atatgtatgtgatacccaaacatcatcaaacttgaagcaaaacatgagct-taaagaaattaacattgtactttattaagcatgaaatttagcatcattt |
54628240 |
T |
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| Q |
194 |
gagtat |
199 |
Q |
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|||||| |
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| T |
54628239 |
gagtat |
54628234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 52983860 - 52983958
Alignment:
| Q |
16 |
gagaactaaatatatcaccaacaaagctacaatggtaactat--caccacatctccatgttaaacaacgtgtacctttgattaatatgcatgtgatacc |
112 |
Q |
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| T |
52983860 |
gagaactaaatataccatcaagaagactgcaatggttactatagcaccacatctccattttaaacaacatgtagcttcaatttatatgcatgtgatacc |
52983958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 55627168 - 55627230
Alignment:
| Q |
117 |
catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgat |
179 |
Q |
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| T |
55627168 |
catcaaacttgaagaaaagcataagcaatacagaaactaacattgcacattattatacatgat |
55627230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 9890958 - 9890819
Alignment:
| Q |
14 |
cagagaactaaatatatcaccaacaaagctacaatggtaactat--caccacatctccatgttaaacaacgtgtacctttgattaatatgcatgtgatac |
111 |
Q |
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||||||||||||||||||| |||||| ||||||| || | ||| ||| |||||||||||||||||||| |||| || ||| ||||||||||| ||| |
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| T |
9890958 |
cagagaactaaatatatcatcaacaagactacaatagttattattgcacaacatctccatgttaaacaacatgtagtttcaatttatatgcatgtg-tac |
9890860 |
T |
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| Q |
112 |
ccaaacatcaaacttgaagaaaagcatgagcaataaagaaa |
152 |
Q |
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| T |
9890859 |
ccaggcatcaaacttgaagaaaagcataagcaataaagaaa |
9890819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 13402954 - 13402857
Alignment:
| Q |
101 |
gcatgtgatacccaaa--catcaaacttgaagaaaagcatgagcaataaagaaatcgacattgcacttcattaaacatgatatttaacatcatttgagt |
197 |
Q |
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|||||||||||||||| ||||||| ||||| |||||||| | |||||| || || |||||||| || |||| |||||||||||||||||| |||||| |
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| T |
13402954 |
gcatgtgatacccaaaaacatcaaaattgaataaaagcataaacaataa-gatattaacattgcatttaattagacatgatatttaacatcaattgagt |
13402857 |
T |
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