View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_5 (Length: 505)
Name: NF16792_low_5
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 282 - 488
Target Start/End: Original strand, 9570840 - 9571046
Alignment:
| Q |
282 |
cagtaattcatcaactccattaattgttataaacaaaatcacctagtcccttgaatacattatcatacatgaacaaaggggtcctttttgactttacctc |
381 |
Q |
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| T |
9570840 |
cagtaattcatcaactccattaattgttataaacaaaatcacctagtcccttgaatacattatcatacatgaacaaaggggtcctttttgactttacctc |
9570939 |
T |
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| Q |
382 |
taagagagtccttttagaaattctgaaagtaaacccaagcctttgacataaatttaaagcttatccaaatttgattttctttctcttactttttgagagg |
481 |
Q |
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| T |
9570940 |
taagagagtccttttagaaattctcaaagtaaacccaagcctttgacataaatttaaagcttatccaaatttgattttctttctcttactttttgagagg |
9571039 |
T |
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| Q |
482 |
tctgaaa |
488 |
Q |
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||||||| |
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| T |
9571040 |
tctgaaa |
9571046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 9570573 - 9570777
Alignment:
| Q |
15 |
aattcaactcaaatctcacgaagatctgaatacaaatttcattatcgatgtaaggacttcgttggtgagtaataatatataaatacttttatcagtgctc |
114 |
Q |
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|||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9570573 |
aattcaactcaaatttcacaaagatctggatacaaatttcattgtcgatgtaaggacctcgttggtgagtaataatatataaatacttttatcagtgctc |
9570672 |
T |
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| Q |
115 |
tctaaatctttaaactcgcattagctctggtgagtcccttagacccaactcgccnnnnnnntatatctattttgagtgttaattacaaaactgtcacata |
214 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
9570673 |
tctaaatctttagactcgcattagttctggtgagtcccttagacccaactcgtaaaaaaaaaaaatctattttgagtgttaattacaaaactgtcacata |
9570772 |
T |
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| Q |
215 |
actac |
219 |
Q |
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||||| |
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| T |
9570773 |
actac |
9570777 |
T |
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