View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_8 (Length: 426)
Name: NF16792_low_8
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 36650098 - 36650499
Alignment:
| Q |
17 |
actattaattttgtgtgtgaaacacaaatcatacgcgccatcggccaaaactgtgagcttcaactcttcatcgctcagactctcactgaaaagttggcca |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650098 |
actattaattttgtgtgtgaaacacaaatcgtacgcgccatcggccaaaactgtgagcttcaactcttcatcgctcagactctcactgaaaagttggcca |
36650197 |
T |
|
| Q |
117 |
acagcattgaacccgaccaagggaactttcttggtcaagcccatcacccaagcaaaggctttcactttctcttgtttaggaaactcgaactctggattat |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650198 |
acagcattgaacccgaccaagggcactttcttggtcaagcccatcacccaagcaaaggctttcactttctcttgtttaggaaactcgaactctggattat |
36650297 |
T |
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| Q |
217 |
tgtatcctcttatggtgccccaagttgcatagtgacacctagagaacggtagggcgtgtaacagctgcggcctcaaatggctgtacaccccatctcgtat |
316 |
Q |
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| T |
36650298 |
tgtgtcctattatgatgccccaagttgcatagtgacacctagagaacggtagggcgtgtaacagctgcggcctcaaacggctgtacaccccatctcgtat |
36650397 |
T |
|
| Q |
317 |
ctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaacacccctgaatcctttccattcgtgcagaacagtatta |
416 |
Q |
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| T |
36650398 |
ctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaacacccctgaatcctttccattcgtgcagaacagtatta |
36650497 |
T |
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| Q |
417 |
tc |
418 |
Q |
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|| |
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| T |
36650498 |
tc |
36650499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 204 - 417
Target Start/End: Complemental strand, 36643285 - 36643072
Alignment:
| Q |
204 |
aactctggattattgtatcctcttatggtgccccaagttgcatagtgacacctagagaacggtagggcgtgtaacagctgcggcctcaaatggctgtaca |
303 |
Q |
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| T |
36643285 |
aactctggaatcttgtgtcctcttatgatgccccaaattgtattgcgacacctagagaacggtaggatgtgtaacagctgaggcctcaaacggctgcata |
36643186 |
T |
|
| Q |
304 |
ccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaacacccctgaatcctttccattcgtg |
403 |
Q |
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|||| ||||||||||||||||||||||| ||| | |||||| | |||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||| |
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| T |
36643185 |
ccccttctcgtatctcacctgccaaggcaacatcaacatttctcagattacccatcatagcaaggaaaaagggtacaccccggaatcctttccatttgtg |
36643086 |
T |
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| Q |
404 |
cagaacagtattat |
417 |
Q |
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| T |
36643085 |
cagaagactattat |
36643072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 36643477 - 36643333
Alignment:
| Q |
36 |
aaacacaaatcatacgcgccatcggccaaaactgtgagcttcaactcttcatcgctcagactctcactgaaaagttggccaacagcattgaacccgacca |
135 |
Q |
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||||||| ||| |||| ||||| | ||||||| ||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
36643477 |
aaacacagatcgtacgtaccatccgacaaaactatgaacttcaactcctcattgctcagactcttactgaaaagttggccaacagcattcaaccccacca |
36643378 |
T |
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| Q |
136 |
agggaactttcttggtcaagcccatcacccaagcaaaggctttca |
180 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36643377 |
taggcactttcttggtcaagcccatcacccaagcaaaggctttca |
36643333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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