View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16792_low_9 (Length: 390)
Name: NF16792_low_9
Description: NF16792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16792_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 126 - 365
Target Start/End: Complemental strand, 33731571 - 33731332
Alignment:
| Q |
126 |
gtaactcagggtcaatatttttaccacaacaataaaactgtgcacttgagatcttataaattttttggcaccgttgccgaagatttgttgaaaatcgagg |
225 |
Q |
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| T |
33731571 |
gtaattcagggtcaatatttttactacaacgataaaactgtgcacttgagatcttataaattttttggcaccgttgccgaagatttgttgaaaatcgagg |
33731472 |
T |
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| Q |
226 |
taatgttttctctaattaatttagtttagaggttttattttattccttgttttgttgcttattttgtacttgtcatggctgaagatcgtcctttgagaga |
325 |
Q |
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| T |
33731471 |
taatgttttctctaattaatttagtttagaggttttattttattccttgttttgttgcttattttgtacttgtcatggctgaagatcgtcctttgagaga |
33731372 |
T |
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| Q |
326 |
atacaagattccttcgcctaaagatcaaagaaaccaatcg |
365 |
Q |
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| T |
33731371 |
atacaagattccttcgcctaaagatcgaagaaaccaatcg |
33731332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33731674 - 33731572
Alignment:
| Q |
1 |
atgtgggatatataactcacac--ttgaatacaacaacaatatccccaaggaaaactttatcattttcaatgaaccatttcataaaaatccaaaaacact |
98 |
Q |
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| T |
33731674 |
atgtgagatatataactcacacacttgaacacaacaacaatattcccaaggaaaactttatcattttcaatgaaccatttcataaaaatccaaaaacact |
33731575 |
T |
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| Q |
99 |
ctt |
101 |
Q |
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| T |
33731574 |
ctt |
33731572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22183394 - 22183430
Alignment:
| Q |
1 |
atgtgggatatataactcacacttgaatacaacaaca |
37 |
Q |
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| T |
22183394 |
atgtgggatatataactcacacttgcacacaacaaca |
22183430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34649464 - 34649428
Alignment:
| Q |
1 |
atgtgggatatataactcacacttgaatacaacaaca |
37 |
Q |
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| T |
34649464 |
atgtgggacatataactcacacttgtatacaacaaca |
34649428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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