View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_10 (Length: 460)
Name: NF16793_high_10
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 12818223 - 12818664
Alignment:
| Q |
9 |
aaaaacgcttacaatcatcaatggcacaactttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagttctcatca |
108 |
Q |
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| T |
12818223 |
aaaaacgcttacaatcatcaatggcacagctttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagttctcatca |
12818322 |
T |
|
| Q |
109 |
tcaggaggtaaccaagcttggggcggcgcagccaaaatccgagtagaattaatcggaaccggagcatacacagcaagatccatcggccccggccaaatat |
208 |
Q |
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| T |
12818323 |
tcaggaggtaaccaagcttggggcggcgcagccaaaatccgagtagaattaatcggaaccggagcatacacagcaagatccatcggccccggccaaatat |
12818422 |
T |
|
| Q |
209 |
ctgacaaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatctcagcgttggttaaccccgcatcctcaggctcagaaactcc |
308 |
Q |
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| T |
12818423 |
ctgacaaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatatcagcgttggttaaccccgcatcctcaggctcagaaactcc |
12818522 |
T |
|
| Q |
309 |
cacaaca------tcaacgtcaatgtcatcctcaagatcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaa |
402 |
Q |
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| T |
12818523 |
cacaacatcaacgtcaacgtcaatgtcatcctcaagatcagccaaagaaatacccatttgagcaggatctagggtttcagaaattgaactcatcattgaa |
12818622 |
T |
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| Q |
403 |
gatgaattcatttgattctctttttgttcttgttcttgttca |
444 |
Q |
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| T |
12818623 |
gatgaattcatttgattctcttcttgttcttgttcttgttca |
12818664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 12755267 - 12755392
Alignment:
| Q |
1 |
aaagaaagaaaaacgcttacaatcatcaatggcacaactttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12755267 |
aaagaaaaaaaaacgcttacaatcatcaatggcacagctttagaatcagaatcataaacttcatcctgtaaggctt-ttcattaaaatcataaatccagt |
12755365 |
T |
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| Q |
101 |
tctcatcatcaggaggtaaccaagctt |
127 |
Q |
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| T |
12755366 |
tctcatcatcaggaggtaaccaagctt |
12755392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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