View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16793_high_11 (Length: 433)
Name: NF16793_high_11
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 50373120 - 50372710
Alignment:
| Q |
20 |
atcattctcacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttatctgttttctttgattacgctt |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
50373120 |
atcattctaacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttaaccgttttctttgattacgctt |
50373021 |
T |
|
| Q |
120 |
tatgaagctgttacttttgctgactctgttcacttgaataaataaattgtgtatacatttatataatctttttcgatgaataaataaattgtgtttgtat |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373020 |
tatgaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgtat |
50372921 |
T |
|
| Q |
220 |
caaaggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50372920 |
caaaggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgct |
50372821 |
T |
|
| Q |
320 |
ctaggctaatttaataatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtcaaa |
419 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50372820 |
ctaggctaattt---aatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtcaaa |
50372724 |
T |
|
| Q |
420 |
tgaatttgtttcct |
433 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50372723 |
tgaatttgtttcct |
50372710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University