View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_12 (Length: 431)
Name: NF16793_high_12
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 5527259 - 5527676
Alignment:
| Q |
14 |
gaatcccaaacatacacttatattagttaataatgaattgagtaaagataatacaagtgtaaaagactttctttttt----accaaatat--gtgtgtgt |
107 |
Q |
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| T |
5527259 |
gaatcccaaacatacacttatattagttaataatgaattgagtaaagataatacaagtgtaaaagacttttttttttttttaccaaatatatgtgtgtgt |
5527358 |
T |
|
| Q |
108 |
aaggaagtttattcaaatgtacgtgttgaatttattcgaccaatgc----------ggttagtaaatagttaaatctcttaagtagttactcggtgttcg |
197 |
Q |
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| T |
5527359 |
aaggaagtttattcaaatgtacgtgttgaatttattcaaccaatgcagtgtaacacggttagtaaatagttaaatctcttaagtagttactcggtgttcg |
5527458 |
T |
|
| Q |
198 |
atcctaatagcatgtgttaggagatctcaattcttaaatagatcttagtgtctgaataaattaattatgaacttctgatctcaactaaaaaagtggtagt |
297 |
Q |
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| T |
5527459 |
atcctaatagcatgtgttaggagatctcaattcttaaatagatcttagtgtctgaataaattaattatgaacttctgatctcaactaaaaaagtggtagt |
5527558 |
T |
|
| Q |
298 |
ggtgaattcaattggtattgaaaaagactacacttgcaatggcaaacatagtgctgaattgagtttgctgttgaatatgaccatacttgcaatagagaca |
397 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5527559 |
ggtaaattcaattggtattgaaaaagactacacttgcaatggcaaacatagtgctgaattgagtttgctgttgaatatgaccatacttgcaatagagaca |
5527658 |
T |
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| Q |
398 |
aagacaaaacccacacca |
415 |
Q |
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|||||||||||||||||| |
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| T |
5527659 |
aagacaaaacccacacca |
5527676 |
T |
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