View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16793_high_14 (Length: 396)

Name: NF16793_high_14
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16793_high_14
NF16793_high_14
[»] chr3 (24 HSPs)
chr3 (1-344)||(52824040-52824383)
chr3 (342-396)||(33644331-33644385)
chr3 (349-396)||(53982142-53982189)
chr3 (343-393)||(11095283-11095333)
chr3 (342-396)||(48587016-48587070)
chr3 (349-391)||(49607550-49607592)
chr3 (349-396)||(11347844-11347891)
chr3 (349-396)||(31456820-31456867)
chr3 (342-393)||(54868810-54868861)
chr3 (342-396)||(52629431-52629485)
chr3 (349-396)||(20764837-20764884)
chr3 (349-396)||(26141452-26141499)
chr3 (349-396)||(30801655-30801702)
chr3 (349-396)||(33118772-33118819)
chr3 (349-390)||(9563136-9563177)
chr3 (349-396)||(27714825-27714872)
chr3 (349-396)||(35536757-35536804)
chr3 (349-392)||(35965704-35965747)
chr3 (349-392)||(36707350-36707393)
chr3 (349-396)||(41189686-41189733)
chr3 (349-396)||(51419282-51419329)
chr3 (349-390)||(47532002-47532043)
chr3 (349-393)||(26754829-26754873)
chr3 (349-393)||(48375628-48375672)
[»] chr7 (21 HSPs)
chr7 (342-396)||(19329973-19330027)
chr7 (344-396)||(8080300-8080352)
chr7 (349-396)||(3434683-3434730)
chr7 (342-396)||(38837348-38837402)
chr7 (343-396)||(36362145-36362198)
chr7 (344-396)||(4999431-4999483)
chr7 (344-396)||(32951410-32951462)
chr7 (349-396)||(46374746-46374793)
chr7 (344-390)||(36361842-36361888)
chr7 (343-396)||(7389520-7389572)
chr7 (343-396)||(40957838-40957891)
chr7 (349-396)||(35523007-35523054)
chr7 (349-396)||(46033723-46033770)
chr7 (354-396)||(19436114-19436156)
chr7 (349-396)||(16374746-16374793)
chr7 (349-396)||(21234532-21234579)
chr7 (357-396)||(31736008-31736047)
chr7 (349-396)||(41423813-41423860)
chr7 (349-390)||(12311041-12311082)
chr7 (349-390)||(39255846-39255887)
chr7 (344-392)||(11044313-11044361)
[»] chr4 (14 HSPs)
chr4 (344-396)||(41236478-41236530)
chr4 (344-396)||(24995024-24995076)
chr4 (349-396)||(48182971-48183018)
chr4 (342-396)||(42044282-42044336)
chr4 (349-396)||(6034175-6034222)
chr4 (349-396)||(29240017-29240064)
chr4 (349-392)||(50052350-50052393)
chr4 (349-392)||(53352496-53352539)
chr4 (349-396)||(54473455-54473502)
chr4 (343-392)||(23608370-23608419)
chr4 (349-396)||(31910323-31910370)
chr4 (357-396)||(40574910-40574949)
chr4 (349-396)||(50526093-50526140)
chr4 (344-392)||(11511380-11511427)
[»] chr1 (16 HSPs)
chr1 (344-396)||(27564652-27564704)
chr1 (349-396)||(37649329-37649376)
chr1 (349-396)||(48716204-48716251)
chr1 (349-396)||(41758936-41758983)
chr1 (344-387)||(26274569-26274612)
chr1 (349-396)||(32813378-32813425)
chr1 (349-396)||(47452242-47452289)
chr1 (343-396)||(9474792-9474845)
chr1 (359-396)||(38632253-38632290)
chr1 (344-396)||(38595285-38595337)
chr1 (349-396)||(3000450-3000497)
chr1 (344-396)||(43263-43315)
chr1 (344-392)||(2582050-2582098)
chr1 (349-393)||(50630592-50630636)
chr1 (349-392)||(49811449-49811492)
chr1 (349-396)||(51898605-51898652)
[»] chr6 (9 HSPs)
chr6 (333-396)||(29857958-29858021)
chr6 (337-396)||(32869809-32869868)
chr6 (344-396)||(11427749-11427801)
chr6 (341-396)||(17598685-17598740)
chr6 (343-396)||(22880574-22880627)
chr6 (349-396)||(15832708-15832755)
chr6 (349-396)||(31976379-31976426)
chr6 (349-396)||(31110683-31110730)
chr6 (349-391)||(22422001-22422043)
[»] chr2 (23 HSPs)
chr2 (341-392)||(7465649-7465700)
chr2 (344-396)||(28381572-28381624)
chr2 (349-396)||(5574422-5574469)
chr2 (349-396)||(10249304-10249351)
chr2 (349-396)||(13438474-13438521)
chr2 (349-392)||(17473155-17473198)
chr2 (349-396)||(20700946-20700993)
chr2 (349-392)||(28863590-28863633)
chr2 (349-396)||(40613824-40613871)
chr2 (342-392)||(19930735-19930785)
chr2 (349-396)||(32505570-32505617)
chr2 (349-396)||(38882733-38882780)
chr2 (344-393)||(40701612-40701661)
chr2 (344-396)||(27864822-27864874)
chr2 (361-396)||(2533254-2533289)
chr2 (349-396)||(30915594-30915641)
chr2 (349-393)||(3440113-3440157)
chr2 (344-396)||(4060816-4060868)
chr2 (349-396)||(9058611-9058658)
chr2 (349-396)||(17823919-17823966)
chr2 (349-392)||(33436022-33436065)
chr2 (349-396)||(36168967-36169014)
chr2 (354-396)||(42257324-42257366)
[»] scaffold0237 (1 HSPs)
scaffold0237 (342-396)||(4160-4214)
[»] chr8 (16 HSPs)
chr8 (342-396)||(14548053-14548107)
chr8 (334-396)||(34012203-34012265)
chr8 (343-396)||(42710210-42710263)
chr8 (349-396)||(504043-504090)
chr8 (349-396)||(23122519-23122566)
chr8 (349-396)||(12831178-12831225)
chr8 (349-392)||(40423865-40423908)
chr8 (349-396)||(43414503-43414550)
chr8 (340-392)||(15197468-15197520)
chr8 (349-396)||(9122316-9122363)
chr8 (349-396)||(1179862-1179909)
chr8 (349-392)||(5957965-5958008)
chr8 (349-396)||(8841354-8841401)
chr8 (357-396)||(15048111-15048150)
chr8 (349-396)||(37038610-37038657)
chr8 (349-396)||(42354510-42354557)
[»] chr5 (13 HSPs)
chr5 (335-396)||(2740405-2740467)
chr5 (334-396)||(33149545-33149607)
chr5 (340-396)||(14831945-14832001)
chr5 (349-396)||(35785330-35785377)
chr5 (342-392)||(40145542-40145592)
chr5 (342-391)||(16115247-16115296)
chr5 (343-392)||(18520800-18520849)
chr5 (349-396)||(15409532-15409579)
chr5 (349-396)||(31009119-31009166)
chr5 (357-392)||(36732872-36732907)
chr5 (353-396)||(13811783-13811826)
chr5 (349-392)||(31132469-31132512)
chr5 (349-396)||(35943814-35943861)
[»] scaffold0321 (1 HSPs)
scaffold0321 (343-393)||(10025-10075)
[»] scaffold1268 (1 HSPs)
scaffold1268 (349-396)||(851-898)
[»] scaffold1267 (1 HSPs)
scaffold1267 (349-396)||(851-898)
[»] scaffold0316 (1 HSPs)
scaffold0316 (349-392)||(17238-17281)
[»] scaffold0110 (1 HSPs)
scaffold0110 (349-396)||(8785-8832)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 52824383 - 52824040
Alignment:
Q  1 atgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatcatgcactatatgattctggtgttgtagttcatgagagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824383 atgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatcatgcactatatgattctggtgttgtagttcatgagagg 52824284  T
Q  101 gaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatcaagtactcagatatagtaaaattaccagtttcttcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824283 gaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatcaagtactcagatatagtaaaattaccagtttcttcatg 52824184  T
Q  201 aagagtgggaggaggagcaggagagtgcagcttgatcccacttagaagaaacctattatgcttcttggtgtgttcgttgacaccatgaaccttcaaatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52824183 aagagtgggaggaggagcaggagagtgcagcttgatcccacttagaagaaacctattatgcttcttggtgtgttcgttgacaccgtgaaccttcaaatca 52824084  T
Q  301 cactctttgcacacaatcgctctatcttcctgacaataaacaaa 344  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  52824083 cactctttgcacacaatcgctctatcttcctgacaaaaaacaaa 52824040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 33644385 - 33644331
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33644385 aaagagtaatgatacatagacaccctttattcccatacacccttatacaccccat 33644331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 53982189 - 53982142
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53982189 aatgatacatagacaccctttattcccatacaaccttgtacaccccat 53982142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 11095283 - 11095333
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11095283 aagagtaatgatacatagacaccctttattctcatacacccttgtacaccc 11095333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 48587016 - 48587070
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  48587016 aaagagtaatgatacatagacaccctttattcccatatacccttgtacatcccat 48587070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 49607592 - 49607550
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacac 391  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49607592 aatgatacatagacaccctttattcccatacacccttgtacac 49607550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 11347844 - 11347891
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11347844 aatggtacatagacaccctttattcccatacacccttatacaccccat 11347891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 31456867 - 31456820
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  31456867 aatgatacataaacaccctttattcccatgcacccttgtacaccccat 31456820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 54868810 - 54868861
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  54868810 aaagagtaatgatacatagacaccttttatttccatacacccttgtacaccc 54868861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 52629485 - 52629431
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  52629485 aaagagtaatgatacatagacacccattatttccatacacccttgtacatcccat 52629431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 20764837 - 20764884
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  20764837 aatgttacatagacaccatttattctcatacacccttgtacaccccat 20764884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 26141452 - 26141499
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  26141452 aatgttacatagacaccctttatttccatacactcttgtacaccccat 26141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 30801655 - 30801702
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  30801655 aatgttacatagacaccttttattctcatacacccttgtacaccccat 30801702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 33118772 - 33118819
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  33118772 aatgttacgtagacaccctttatttccatacacccttgtacaccccat 33118819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 9563177 - 9563136
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtaca 390  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  9563177 aatgatacatagataccctttattcccatacacctttgtaca 9563136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 27714825 - 27714872
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||| |||| |||||||| | ||||||||||||||||||||    
T  27714825 aatgatacatatacactctttattctcgtacacccttgtacaccccat 27714872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 35536804 - 35536757
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||| ||||||||||    
T  35536804 aatgttacatagacaccatttattctcatacacccttctacaccccat 35536757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 35965704 - 35965747
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||    
T  35965704 aatgttacatagacaccttttattctcatacacccttgtacacc 35965747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 36707350 - 36707393
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||    
T  36707350 aatgatacatagacaccttttattcccatacattcttgtacacc 36707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 41189686 - 41189733
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  41189686 aatgttacatagacaccctttatttccatacactcttgtacactccat 41189733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 51419282 - 51419329
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||| |||||| |||||||||||||||||||||||    
T  51419282 aatgttacataaacaccttttatttccatacacccttgtacaccccat 51419329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 47532043 - 47532002
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtaca 390  Q
    |||| |||||| ||||||||||||||||||||| ||||||||    
T  47532043 aatgttacataaacaccctttattcccatacacacttgtaca 47532002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 26754873 - 26754829
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  26754873 aatgttacatagacactctttatttccatacacctttgtacaccc 26754829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 48375628 - 48375672
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||| ||||||||||||||||||| ||||||| | ||||||||||    
T  48375628 aatgttacatagacaccctttatttccatacatctttgtacaccc 48375672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 19330027 - 19329973
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19330027 aaagagtaatgatacatagacaccctttattcccatacacccttgtacaccccat 19329973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 8080300 - 8080352
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8080300 agagtaatgatacatagacaccctttattcccatacacccttgtacaccccat 8080352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 3434730 - 3434683
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3434730 aatgatacatagacaccctttattcccatacagccttgtacaccccat 3434683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 38837402 - 38837348
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38837402 aaagagtaatgatacatagacaccctttatttccatacacccttgtacatcccat 38837348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 36362198 - 36362145
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  36362198 aagagtaatgatacatagacaccctttattctcatacacccttgtacatcccat 36362145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 4999431 - 4999483
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  4999431 agagtaatgatacatagacaccttttattctcatacacccttgtacaccccat 4999483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 32951410 - 32951462
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  32951410 agagtaatgatacatagacaccccttattctcatacacccttgtacaccccat 32951462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 46374746 - 46374793
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  46374746 aatgttacatagacaccatttattcccatacacccttgtacaccccat 46374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 36361842 - 36361888
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtaca 390  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  36361842 agagtaatgatacatagacaccctttattctcatacacccttgtaca 36361888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 7389572 - 7389520
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7389572 aagagtaatgatacatagacatcctttattcccatacaccc-tgtacaccccat 7389520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 40957891 - 40957838
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  40957891 aagagtaatgatacatagacacccattattttcatacacccttgtacaccccat 40957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 35523054 - 35523007
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  35523054 aatgttacataaacaccatttattcccatacacccttgtacaccccat 35523007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 46033723 - 46033770
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  46033723 aatgttacatagacaccatttattctcatacacccttgtacaccccat 46033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 19436114 - 19436156
Alignment:
Q  354 tacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  19436114 tacatagacaccatttattctcatacacccttgtacaccccat 19436156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 16374746 - 16374793
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||| |||||||| |||||||| ||||    
T  16374746 aatgttacatagacaccctttattctcatacacctttgtacactccat 16374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 21234579 - 21234532
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| |||||||| |||||||||||||    
T  21234579 aatgttacatagacaccttttattctcatacaccattgtacaccccat 21234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 31736047 - 31736008
Alignment:
Q  357 atagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  31736047 atagataccttttattcccatacacccttgtacaccccat 31736008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 41423860 - 41423813
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||||||||||| |||||||| |||||||||||||    
T  41423860 aatgttacataaacaccctttattctcatacacctttgtacaccccat 41423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 12311082 - 12311041
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtaca 390  Q
    |||| ||||||||||||||||||| ||||||||| |||||||    
T  12311082 aatgttacatagacaccctttatttccatacacctttgtaca 12311041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 39255846 - 39255887
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtaca 390  Q
    |||| |||||||||||||||||||  ||||||||||||||||    
T  39255846 aatgttacatagacaccctttattatcatacacccttgtaca 39255887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 11044361 - 11044313
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| |||||||||||||||| |||||||  |||||||| |||||||||    
T  11044361 agagtaatgatacatagacactctttattttcatacacctttgtacacc 11044313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 41236530 - 41236478
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41236530 agagtaatgatacatagacaccctttattcccatacacccttgtacaccccat 41236478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 24995024 - 24995076
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24995024 agagtaatgatacatagacaccctttattcccatacaccattgtacaccccat 24995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 48182971 - 48183018
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48182971 aatgatacatagacaccctttattctcatacacccttgtacaccccat 48183018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 42044282 - 42044336
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  42044282 aaagagtaatgatacatagacaccctttatttccatacacccttgtacatcccat 42044336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 6034222 - 6034175
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccat 6034175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 29240064 - 29240017
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  29240064 aatgttacatagacaccctttattcccatacactcttgtacaccccat 29240017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 50052350 - 50052393
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  50052350 aatgttacatagacaccctttattcccatacacctttgtacacc 50052393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 53352496 - 53352539
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  53352496 aatgatacatagacaccctttattttcatacacccttgtacacc 53352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 54473455 - 54473502
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  54473455 aatgatacatgaacaccctttattcccatacacccttgtacactccat 54473502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 23608419 - 23608370
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||| ||||||||||||||| |||||||||||||||| || ||||||||    
T  23608419 aagagtaatgatacatagacatcctttattcccatacatccctgtacacc 23608370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 31910370 - 31910323
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||||||||||| |||||||| |||||    
T  31910370 aatgttacatagacaccatttattcccatacactcttgtacatcccat 31910323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 40574949 - 40574910
Alignment:
Q  357 atagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  40574949 atagacaccttttattctcatacacccttgtacaccccat 40574910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 50526093 - 50526140
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| |||||||||||| | |||||||||||||||||||||    
T  50526093 aatgttacataaacaccctttatttctatacacccttgtacaccccat 50526140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 11511380 - 11511427
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  11511380 agagtaatgatacatagacaca-tttatttccatacacccttgtacacc 11511427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 27564652 - 27564704
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27564652 agagtaatgatacatagacaccctttattcccatacacccttgtacaccccat 27564704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 37649376 - 37649329
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649376 aatgatacatagacaccctttattcccatacacccttgtacaccccat 37649329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 48716204 - 48716251
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48716204 aatgatacatagacaccctttattcccatacacccttgtacaccccat 48716251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 41758983 - 41758936
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41758983 aatgatacatagacaccctttattctcatacacccttgtacaccccat 41758936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 26274612 - 26274569
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgt 387  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  26274612 agagtaatgatacatagacaccctttattcccatacacccttgt 26274569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 32813425 - 32813378
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  32813425 aatgttacatagacaccatttattcccatacacccttgtacaccccat 32813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 47452242 - 47452289
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  47452242 aatgatacatagacactctttattcccatacatccttgtacaccccat 47452289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 9474792 - 9474845
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||| |||||    
T  9474792 aagagtaatgatacatagacactctttattctcatacacccttgtacatcccat 9474845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 38632253 - 38632290
Alignment:
Q  359 agacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38632253 agacaccctttattcccatacacccttgtacaccccat 38632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 38595337 - 38595285
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  38595337 agagtaatgatacatagacatccattatttccatacacccttgtacaccccat 38595285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 3000497 - 3000450
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  3000497 aatgatacatagacatccattatttccatacacccttgtacaccccat 3000450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 43315 - 43263
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||| |||||||||||  |||||| ||||||||||||||    
T  43315 agagtaatgatacatagataccctttattcttatacactcttgtacaccccat 43263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 2582098 - 2582050
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| ||||||||||| |||||||||||||  |||||||||||||||||    
T  2582098 agagtaatgatacataaacaccctttattctaatacacccttgtacacc 2582050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 50630636 - 50630592
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||    
T  50630636 aatgatgcatagacaccatttattctcatacacccttgtacaccc 50630592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 49811449 - 49811492
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||    
T  49811449 aatgttacatagacaccctttattctcatacacccttgtgcacc 49811492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 51898605 - 51898652
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| |||||||||||| | |||||||||||||||||||||    
T  51898605 aatgttacataaacaccctttatttctatacacccttgtacaccccat 51898652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 29858021 - 29857958
Alignment:
Q  333 acaataaacaaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29858021 acaaaaaaaaaagagtaatgatacatagacaccatttattcccatacacccttgtacaccccat 29857958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 32869868 - 32869809
Alignment:
Q  337 taaacaaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  32869868 taaaaaaagagtaatgatacatagacaccctttattcccatacatccttgtacaccccat 32869809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 11427801 - 11427749
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11427801 agagtaatgatacatagacaccctttattctcatacacccttgtacaccccat 11427749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 17598740 - 17598685
Alignment:
Q  341 caaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  17598740 caaagagtaatgatacatagacaccttttatttccatacacccttgtacaccccat 17598685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 22880574 - 22880627
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  22880574 aagagtaatgatacatatacaccatttattcccatacacccttgtacaccccat 22880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 15832755 - 15832708
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  15832755 aatgatacgtagacaccctttattccaatacacccttgtacaccccat 15832708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 31976426 - 31976379
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  31976426 aatgttacatagacaccatttattctcatacacccttgtacaccccat 31976379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 31110683 - 31110730
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  31110683 aatgttacatagacatcctttatttccatacacctttgtacaccccat 31110730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 22422001 - 22422043
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacac 391  Q
    |||| |||||||||||| ||||||| |||||||||||||||||    
T  22422001 aatgttacatagacaccatttattctcatacacccttgtacac 22422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 7465649 - 7465700
Alignment:
Q  341 caaagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7465649 caaagagtaatgatacatagacaccctttattcccatacacccttgtacacc 7465700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 28381572 - 28381624
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  28381572 agagtaatgatacatagacaccctttattcccatacatccttgtacaccccat 28381624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 5574422 - 5574469
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5574422 aatgatacatagacaccctttattcccatacacccttgtacacgccat 5574469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 10249304 - 10249351
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10249304 aatgatacatagacaccctttattctcatacacccttgtacaccccat 10249351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 13438521 - 13438474
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  13438521 aatgatacatagacaccctttattcccatacatccttgtacaccccat 13438474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 17473198 - 17473155
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17473198 aatgatacatagacaccctttattcccatacacccttgtacacc 17473155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 20700993 - 20700946
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  20700993 aatgttacatagacaccctttattcccatacacccttgtacaccccat 20700946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 28863633 - 28863590
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28863633 aatgatacatagacaccctttattcccatacacccttgtacacc 28863590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 40613824 - 40613871
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  40613824 aatgttacatagacaccctttattcccatacacccttgtacaccccat 40613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 19930735 - 19930785
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  19930735 aaagagtaatgatacatagacaccttttattcccatacacccttgtacacc 19930785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 32505570 - 32505617
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  32505570 aatgatacatagacactctttattctcatacacccttgtacaccccat 32505617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 38882733 - 38882780
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  38882733 aatgatacatagagaccatttattcccatacacccttgtacaccccat 38882780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 40701661 - 40701612
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  40701661 agagtaatgatacatagacaccttttatttccatacacccttgtacaccc 40701612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 27864874 - 27864822
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||| |||||    
T  27864874 agagtaatgatacattgacaccctttattctcatacacccttgtacatcccat 27864822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 2533289 - 2533254
Alignment:
Q  361 acaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||||||||||||||    
T  2533289 acaccctttattcccatacacccttgtacaccccat 2533254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 30915641 - 30915594
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  30915641 aatgatacatagacatccattatttccatacacccttgtacaccccat 30915594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 3440157 - 3440113
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||    
T  3440157 aatgttacatagacaccctttatttccatacacctttgtacaccc 3440113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 4060868 - 4060816
Alignment:
Q  344 agaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||| ||| | |||||| |||||||||||||||||||||||    
T  4060868 agagtaatgatacataaacatcttttatttccatacacccttgtacaccccat 4060816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 9058658 - 9058611
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||| ||| | ||||||||||||||||||| ||||||||||||||    
T  9058658 aatgatatataaataccctttattcccatacactcttgtacaccccat 9058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 17823966 - 17823919
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||| ||||||||  ||||||||||||||||||||||    
T  17823966 aatgttacatagacatcctttatttacatacacccttgtacaccccat 17823919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 33436022 - 33436065
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||    
T  33436022 aatgatgcatagacaccttttattctcatacacccttgtacacc 33436065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 36169014 - 36168967
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||||||||||| ||||||| ||||||||||||||    
T  36169014 aatgttacataaacaccctttattctcatacactcttgtacaccccat 36168967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 42257366 - 42257324
Alignment:
Q  354 tacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||| | |||||| ||||||||||||||    
T  42257366 tacatagacaccctttatttctatacactcttgtacaccccat 42257324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 4214 - 4160
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4214 aaagagtaatgatacatagacaccatttattcccatacacccttgtacaccccat 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 14548107 - 14548053
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  14548107 aaagagtaatgatacatagacaccctttattcccatacatccttgtacaccccat 14548053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 34012203 - 34012265
Alignment:
Q  334 caataaacaaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  34012203 caataaaaaaagagtaatgatacatagacaccctttattctcgtacacccttgtacaccccat 34012265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 42710210 - 42710263
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42710210 aagagtaatgatacacagacaccctttattcccatacacccttgtacaccccat 42710263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 504043 - 504090
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  504043 aatgatacatagacaccctttattctcatacacccttgtacaccccat 504090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 23122519 - 23122566
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23122519 aatgatacatagacaccctttattctcatacacccttgtacaccccat 23122566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 12831225 - 12831178
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12831225 aatgatacatagacaccatttattctcatacacccttgtacaccccat 12831178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 40423865 - 40423908
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  40423865 aatgatacatagacaccttttattcccatacacccttgtacacc 40423908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 43414503 - 43414550
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43414503 aatgttacatagacaccctttattgccatacacccttgtacaccccat 43414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 15197520 - 15197468
Alignment:
Q  340 acaaagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| ||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  15197520 acaacgagtaatgatacatagacactttttattcccatacacccttgtacacc 15197468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 9122363 - 9122316
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||    
T  9122363 aatgatacatagacattctttattcccatacactcttgtacaccccat 9122316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 1179862 - 1179909
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||||    
T  1179862 aatgatagatagacatcctttattcccatatatccttgtacaccccat 1179909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 5958008 - 5957965
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||    
T  5958008 aatgttacataaacaccctttattctcatacacccttgtacacc 5957965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 8841354 - 8841401
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  8841354 aatgttacatagacaccatttattctcatacactcttgtacaccccat 8841401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 15048111 - 15048150
Alignment:
Q  357 atagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  15048111 atagacaccctttattccgatacacccttgtacatcccat 15048150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 37038657 - 37038610
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| |||||||||||| | |||||||||||||||||||||    
T  37038657 aatgttacataaacaccctttatttctatacacccttgtacaccccat 37038610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 42354510 - 42354557
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| ||||||| ||||||||||| ||||||||||    
T  42354510 aatgttacatagacaccatttattctcatacacccttctacaccccat 42354557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 2740467 - 2740405
Alignment:
Q  335 aataaaca-aagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  2740467 aataaacagaagagtaatgatacatagacaccctttattcccatacacccttgtacatcccat 2740405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 33149545 - 33149607
Alignment:
Q  334 caataaacaaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  33149545 caataaaaaaagagtaatgatacatagacaccctttattctcgtacacccttgtacaccccat 33149607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 14832001 - 14831945
Alignment:
Q  340 acaaagaggaatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  14832001 acaacgagtaatgatacatagacaccctttattcccatacatccttgtacaccccat 14831945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 35785377 - 35785330
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccat 35785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 40145592 - 40145542
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  40145592 aaagagtaatgatacatagacaccctttattctcatatacccttgtacacc 40145542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 16115247 - 16115296
Alignment:
Q  342 aaagaggaatgatacatagacaccctttattcccatacacccttgtacac 391  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  16115247 aaagagtaatgatacatagacaccctttattctcatacactcttgtacac 16115296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 18520800 - 18520849
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  18520800 aagagtaatgatacatagacaccctttattttcatacacccttgtacacc 18520849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 15409532 - 15409579
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  15409532 aatgttacataaacaccctttattcgcatacacccttgtacaccccat 15409579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 31009166 - 31009119
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||    
T  31009166 aatgttacatagacaccctttattctcatacacctttgtacaccccat 31009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 392
Target Start/End: Original strand, 36732872 - 36732907
Alignment:
Q  357 atagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||||||||||||||||||||||||||||    
T  36732872 atagacaccctttattcccatacacccttgtacacc 36732907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 13811826 - 13811783
Alignment:
Q  353 atacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||    
T  13811826 atacatagacaccatttattcccatacatccttgtacatcccat 13811783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 31132512 - 31132469
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||    
T  31132512 aatgatacataaacaccctttattttcatacacccttgtacacc 31132469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 35943814 - 35943861
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||  |||||| |||||||||||||||||||||||    
T  35943814 aatgttacatagacacattttatttccatacacccttgtacaccccat 35943861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 10025 - 10075
Alignment:
Q  343 aagaggaatgatacatagacaccctttattcccatacacccttgtacaccc 393  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||||||    
T  10025 aagagtaatgatacatagacacccattatttccatacacccttgtacaccc 10075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 851 - 898
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccat 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 851 - 898
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccat 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 17281 - 17238
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacacc 392  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||    
T  17281 aatgttacatagacaccctttatttccatacacctttgtacacc 17238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 8785 - 8832
Alignment:
Q  349 aatgatacatagacaccctttattcccatacacccttgtacaccccat 396  Q
    |||| |||||||||||| |||||||  |||||||||||||||||||||    
T  8785 aatgttacatagacaccttttattcttatacacccttgtacaccccat 8832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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