View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_17 (Length: 356)
Name: NF16793_high_17
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 340
Target Start/End: Complemental strand, 36822759 - 36822444
Alignment:
| Q |
30 |
taaaatacgtattttattggtgtatgagaggaatggggggtgagacaagaagaaaatttctaatctaaaattctcaataattat-------attgaaatt |
122 |
Q |
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| T |
36822759 |
taaaatacgtattttattggtgtatgagaggaatggggggtgagacaagaagaaaatttctaatctaaaattctcaataattatcgtgcatattgaaatt |
36822660 |
T |
|
| Q |
123 |
tgtcaaggatcttttaaaataagtaaaatgtaaaatgataaaatcaatagttgttattgtaacaaacttgctgtaacaggnnnnnnnnnctactatataa |
222 |
Q |
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| T |
36822659 |
tgtcaaggatcttttaaaataagtaaaatgtaaaatgataaaatcaatagttgttattgtaacaaacttgctgtaacaggaaaaaaaaactactatataa |
36822560 |
T |
|
| Q |
223 |
gttgttccaaacaaggaaagtgaaccgaaccaaagttaaggttgttggagaagtgcggttctctctctgtctctgaatatctgtgtgagcgagtgaaaca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
36822559 |
gttgttccaaacaaggaaagtgaaccgaaccaaagttaaagttgttggagaagtgcggttctctctctgtctctgaatatc--tgtgagtgagtgaaaca |
36822462 |
T |
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| Q |
323 |
ataaaaacagaacaaagc |
340 |
Q |
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|||||||||||||||||| |
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| T |
36822461 |
ataaaaacagaacaaagc |
36822444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 39790192 - 39790140
Alignment:
| Q |
138 |
aaaataagtaaaatgtaaaatgataaaatcaatagttgttattgtaacaaact |
190 |
Q |
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||||||| |||| |||||| |||||||||||| |||||||||| || |||||| |
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| T |
39790192 |
aaaataaataaagtgtaaagtgataaaatcaagagttgttattatagcaaact |
39790140 |
T |
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