View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_2 (Length: 628)
Name: NF16793_high_2
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Complemental strand, 32852288 - 32851691
Alignment:
| Q |
18 |
ctacatctagtcatggtctcaaatgtcgcattgcatctatgt-atatattgttaccaaattgtttaattcttaggtttatgccttcagtaaatgatgtac |
116 |
Q |
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| T |
32852288 |
ctacatctagtcatggtctcaaatgtcgcattgcatctatgttatatattgttaccaaattgtttaattcttaggtttatgccttcagtaaatgatgtac |
32852189 |
T |
|
| Q |
117 |
ctagggaagtgaagccaataactttatttgctcactattcaaacaggtatatttttactttgtgtcagctgacataaacattcctttgttttaaaattgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32852188 |
ctagggaagtgaagccaataactttatttgctcactattcaaacaggtatacttttacattgtgtcagctgacataaacattccttcgttttaaaattgt |
32852089 |
T |
|
| Q |
217 |
tattgttatcgagatatcattttcattcttgtgtttagaccatgttttagttaatcnnnnnnnnnnnnggagtcatatttcttcttatatgaatgtagat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32852088 |
tattgttatcgagatatcattttcattcttgtgtttagaccatgttttagttaatccttttcttttttggagtcatatttcttcttatatgaatgtagat |
32851989 |
T |
|
| Q |
317 |
aaaccaactattacatgatcgccaaaatattgaccttttttgtttctcttctatcaatataaatgcctatttttggaattttcgcacgatggtaaaaacc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32851988 |
aaaccaactattacatgatcgccaaaatattgaccttttttgtttctcttctatcaatataaatgcctatttttggaattttcgcacgacggtaaaaacc |
32851889 |
T |
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| Q |
417 |
tttggtgaaaggaacatgtctagaaggaaaacaaagctggtttgaatgactgtgtgtgtattagtagaacttggaacatgatacctatgtaacatatctt |
516 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32851888 |
tttggtgaaaggaacatgtctagaaggaaaataaagctggtttgaatgactgtgtgtgtattagtagaactt----catgatacctatgtaacatatctt |
32851793 |
T |
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| Q |
517 |
gttcacatgaagtaaaagaaaattagggaacactacaatggttgataattgtcatcacttgctgatagtatcactagacctgaatattgtatactctctc |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851792 |
gttcacatgaagtaaaagaaaattagggaacactacaatggttgataattgtcattacttgctgatagtatcactagacctgaatattgtatactctctc |
32851693 |
T |
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