View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_20 (Length: 316)
Name: NF16793_high_20
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 23954584 - 23954885
Alignment:
| Q |
1 |
aaagaagaagactttaggcatgaaattaa-ttaacctacaaagagtgattaaatatttttcttcttcatctccctaacataatggccataaaaacagttc |
99 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23954584 |
aaagaagaagactttaggcatgaaattaaattaacctacaaagagtgattaaatatttttcttcttcatctccctaacataatggccataaaaacagttc |
23954683 |
T |
|
| Q |
100 |
acatgaacagccatgaaatatgctaccaaagtaccaaccacataataataatgtagctagaccatttaagtttcttattatcatttaattatttaattct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23954684 |
acatgaacagccatgaaatatgctaccaaagtaccaaccacataataataatgtagctagaccatttaagtttcttattatcatttaattatttaattct |
23954783 |
T |
|
| Q |
200 |
ggttgatccattgtttgtgaccaggaacccactttggacatttaggactaaagtaacttgacattacccttgagttcaagagttcaacaactggtgcaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23954784 |
ggttgatccattgtttgtgaccaggaacccactttggacatttaggactaaagtaacttgacattacccttgagttcaagagttcaacaactggtgcaaa |
23954883 |
T |
|
| Q |
300 |
ct |
301 |
Q |
| |
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|| |
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|
| T |
23954884 |
ct |
23954885 |
T |
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