View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_21 (Length: 314)
Name: NF16793_high_21
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 36070597 - 36070880
Alignment:
| Q |
14 |
caaaggcaccttttccaatttgctcaagtacttcatactgctccatgtcatcaatttagtnnnnnnnnnntcccctctcttcagtacaaaccaaaacaat |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36070597 |
caaaagcaccttttccaatttgctcaagtacttcatactgctccatgtcatcaatttagtaaaaaaaaattcccctctcttcagtacaaaccaaaacaat |
36070696 |
T |
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| Q |
114 |
tgtgttagtcaagatttgcatattctttgtactcatcaacataacatttttccttttctctttacttatggtagaatnnnnnnngtactgcacaatgcaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
36070697 |
tgtgttagtcaagatttgcatattctttgtactcatcaacataacatttttccttttctctttacttatggtagaataaaaaaagtactgcacaacgcaa |
36070796 |
T |
|
| Q |
214 |
ttaaacccgaaaataaactcaaaatcagtaatcagttactaaattcgacaaataaattaaatgtagtataaaaactaagtttag |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36070797 |
ttaaacccgaaaataaactcaaaatcagtaatcagttactaaattcgacaaataaattaaatgtagtataaaaactaagtttag |
36070880 |
T |
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