View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_high_5 (Length: 506)
Name: NF16793_high_5
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 16887491 - 16887978
Alignment:
| Q |
1 |
acaagatccacgcatctaatagcaaaataatagagccaggattcccaactttcagcagcagaatcctgcattcaggcaattggacaatgtcggccgaaag |
100 |
Q |
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| T |
16887491 |
acaagatccacgcatctaatagcaaaata-tagagccaggattcccaactttcagcagcagaatcctgcattcaggcaattggacaatgtcggccgaaag |
16887589 |
T |
|
| Q |
101 |
gtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaataatggtcatacaacattaagtcagtgtatgcatgtgagagtatgagcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16887590 |
gtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaataatggtcatacaacatcaagtcagtgtatgcatgtgagagtatgagcgaa |
16887689 |
T |
|
| Q |
201 |
tatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgtccaacgcaactccacttgctgcacacctccaatgcacagagcaggttaa |
300 |
Q |
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| T |
16887690 |
tatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgtccaacgcaactccacttgctgcacacctccaatgcacagagcaggttaa |
16887789 |
T |
|
| Q |
301 |
ggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacacatatcaagtttcatgcacatgaatacattactatcttctaaaacatccgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16887790 |
ggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacacatatcaagtttcatgcacatgaatacattactatcttctaaaacctccgg |
16887889 |
T |
|
| Q |
401 |
ttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaaaaggtatcattaggttgccccatctcgcaggtgttcat |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
16887890 |
ttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaaaaggtatcattaggttgccccatctcacaagtgttcat |
16887978 |
T |
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