View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_10 (Length: 471)
Name: NF16793_low_10
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 6915401 - 6915871
Alignment:
| Q |
1 |
aatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaac |
100 |
Q |
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| T |
6915401 |
aatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttggagcaaacgaagtttggtcagttaac |
6915500 |
T |
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| Q |
101 |
atatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaaggttcctcgcttagttgagatgcat |
200 |
Q |
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| T |
6915501 |
atatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaaggttcctcgcttagttcagatgcat |
6915600 |
T |
|
| Q |
201 |
tctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcgg |
300 |
Q |
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| T |
6915601 |
tctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccagcgatacatttactgatgggtcgg |
6915700 |
T |
|
| Q |
301 |
ttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagcttt |
400 |
Q |
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| T |
6915701 |
ttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagcttt |
6915800 |
T |
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| Q |
401 |
gaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggcaaacaatcattt |
471 |
Q |
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| T |
6915801 |
gaaccgcttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaacaatcattt |
6915871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 15040345 - 15040241
Alignment:
| Q |
279 |
gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctg |
378 |
Q |
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||||| |||||||||||||| |||||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15040345 |
gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctg |
15040246 |
T |
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| Q |
379 |
gaggg |
383 |
Q |
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||||| |
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| T |
15040245 |
gaggg |
15040241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
| Q |
387 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggca |
460 |
Q |
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| T |
15040137 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca |
15040064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 15044061 - 15043971
Alignment:
| Q |
19 |
aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaacatatctaag |
109 |
Q |
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| T |
15044061 |
aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcagctaacatatttaag |
15043971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
219 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
274 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
107 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
169 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
| Q |
363 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
432 |
Q |
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| T |
43895598 |
gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc |
43895529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
| Q |
363 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
432 |
Q |
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| T |
44306022 |
gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc |
44305953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
| Q |
225 |
gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta |
303 |
Q |
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||||| |||||||| ||||| |||| ||||| || ||||||||||||| | || || ||||||||||||||||| |||| |
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| T |
35856854 |
gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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