View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_11 (Length: 466)
Name: NF16793_low_11
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 37448138 - 37447846
Alignment:
| Q |
13 |
cagagaagaaacacattgtttggataaacaacttaattaagcgttataagcacc--acatttactacctatgtctctaaaataaaggaccctcttctatg |
110 |
Q |
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| T |
37448138 |
cagaaaagaaacgcattgtttggataaacaacttaattaagcgttataagcacctaacatttactacctatgtctctaaaataaaggaccctcttctatg |
37448039 |
T |
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| Q |
111 |
tctatatatgagtgatacatacagctcaacaattaacaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaat |
210 |
Q |
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| T |
37448038 |
tctatatatgagtgatacatacagctcaacaattaaaaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaat |
37447939 |
T |
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| Q |
211 |
aaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatgttttgataatattcctgcat |
303 |
Q |
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| T |
37447938 |
aaaatcatcaccttttccaagttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatcttttgataatattcctgcat |
37447846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 37447770 - 37447700
Alignment:
| Q |
379 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacagcaaattg |
449 |
Q |
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| T |
37447770 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacaacaaattg |
37447700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 18852891 - 18852923
Alignment:
| Q |
23 |
acacattgtttggataaacaacttaattaagcg |
55 |
Q |
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| T |
18852891 |
acaccttgtttggataaacaacttaattaagcg |
18852923 |
T |
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