View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_17 (Length: 385)
Name: NF16793_low_17
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 24212672 - 24213039
Alignment:
| Q |
1 |
ctcatgagctttttgaaatgttgtgtttagttgtgctatgttattttgatactttgtaannnnnnnaatgtcagcatccatgtcatatgaattctcaata |
100 |
Q |
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| T |
24212672 |
ctcatgagctttttgaaatgttatgtttagttgtgctatgttattttgatactttgtaatttttttaatgtcagcatctatgtcatatgaattctcaata |
24212771 |
T |
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| Q |
101 |
ctatcatgtcaaactttgaacacttgtaatgtttagtttgatattatatgtgattctcttttcaatgcatatgcattctttcaattatacatgatgagag |
200 |
Q |
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| T |
24212772 |
ctatcatgtcaaactttgaacatttgtaatgtttagtttgatattatatgtgattctcttttcaatgcatatgcattctttcaattatacatgatgagag |
24212871 |
T |
|
| Q |
201 |
ataatttgcatatggatgagaacattgaccaatgtgtttacctctgttttcaagcaattttgagtgaagaaaattattggaagtgctttttccctaataa |
300 |
Q |
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| T |
24212872 |
ataatttgcatatggatgagaacattgaccattgtgtttagctctgttttcaagcaattttgagtgaagaaaattattggaagtgctttttccctaa--- |
24212968 |
T |
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| Q |
301 |
ttaatgtttgctttgttttcaagcatatggaggtttcattcacttctataactttcaatcgaaggattttgt |
372 |
Q |
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| T |
24212969 |
-taatgtttgctttgttttcaagcatatggaggtttcattcacttctataactttcaatcgaaggattttgt |
24213039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7338579 - 7338214
Alignment:
| Q |
1 |
ctcatgagctttttgaaatgttgtgtttagttgtgctatgttattttgatactttgtaannnnnnnaatgtcagcatccatgtcatatgaattctcaata |
100 |
Q |
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| T |
7338579 |
ctcatgagctttttgaa-tgttatgtttagttgtgctatgttattttgatactttgtaattttgttaatgtcagcatctatgtcatatgaattctcaata |
7338481 |
T |
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| Q |
101 |
ctatcatgtcaaactttgaacacttgtaatgtttagtttgatattatatgtgattctcttttcaatgcatatgcattctttcaattatacatgatgagag |
200 |
Q |
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| T |
7338480 |
ctatcacgtcaaactttggacacttgtaatgtttagtttgatattatatgtgattctcttttcaatgcatatgaattctttcaattatacatgatgagag |
7338381 |
T |
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| Q |
201 |
ataatttgcatatggatgagaacattgaccaatgtgtttacctctgttttcaagcaattttgagtgaagaaaattattggaagtgctttttccctaataa |
300 |
Q |
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| T |
7338380 |
ataatttgcatatggatgagaacattcaccattatgtttagctctgttttcaagcaa--ttgagtgaagaaaattattggaagtgctttttccctaataa |
7338283 |
T |
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| Q |
301 |
ttaatgtttgctttgttttcaagcatatggaggtttcattcacttctataactttcaatcgaaggattttgt |
372 |
Q |
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| || || ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7338282 |
t--at-ttggctctgttttcaaacatatggaggtttcattcacttccataactttcaatcgaaggattttgt |
7338214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 120 - 372
Target Start/End: Original strand, 26726218 - 26726466
Alignment:
| Q |
120 |
acacttgtaatgtttagtttgatattatatgtgattctcttttcaatgcatatgcattctttcaattatacatgatgagagataatttgcatatggatga |
219 |
Q |
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| T |
26726218 |
acacttgtaatgtttggtttgatattatatgtgattctcttttcaatgcatatgcattctttcaattatacatgttgagagataatttgcatatggattg |
26726317 |
T |
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| Q |
220 |
gaacattgaccaatgtgtttacctctgttttcaagcaattttgagtgaagaaaattattggaagtgctttttccctaataattaatgtttg-ctttgttt |
318 |
Q |
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|||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| || ||||| |
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| T |
26726318 |
gaacattgaccattatgtttagctctgttttcaagcaattttgagtgaagaaaaatattggaagtgcttttttcctaataat----gtttggctctgttt |
26726413 |
T |
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| Q |
319 |
tcaagcatatggaggtttcattcacttctataactttcaatcgaaggattttgt |
372 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26726414 |
tcaagcatatggaggtttcattcacttc-ataactttcaatcgaaggattttgt |
26726466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 12880015 - 12880089
Alignment:
| Q |
153 |
attctcttttcaatgcatatgcattctttcaattatacatgatgagagataatttgcatatggatgagaacattg |
227 |
Q |
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|||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
12880015 |
attctcttatcaatgcatatgcattcttccaaccctacatggtgagagataatttgcagatggatgagaacattg |
12880089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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