View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_18 (Length: 378)
Name: NF16793_low_18
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_18 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 8317327 - 8316978
Alignment:
| Q |
12 |
atgaattagttgtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgca |
111 |
Q |
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| T |
8317327 |
atgaattagttgtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgca |
8317228 |
T |
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| Q |
112 |
taataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
211 |
Q |
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| T |
8317227 |
ttataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaa |
8317128 |
T |
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| Q |
212 |
actttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatg |
311 |
Q |
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| T |
8317127 |
actttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatg |
8317028 |
T |
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| Q |
312 |
aacagaaatgctgggaaattttatggtggagaacacatggagtaccaatt |
361 |
Q |
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| T |
8317027 |
aacagaaatgctgggaaattttatggtggaggacacatggagtaccaatt |
8316978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
126 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
211 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 347
Target Start/End: Original strand, 1745 - 1967
Alignment:
| Q |
125 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
224 |
Q |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
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| Q |
225 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
324 |
Q |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
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| Q |
325 |
ggaaattttatggtggagaacac |
347 |
Q |
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| T |
1945 |
ggaaattttatggtagagtacac |
1967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 313
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
187 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
286 |
Q |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
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| Q |
287 |
tgaggagttttaggtgtccaaaatgaa |
313 |
Q |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 7795631 - 7795571
Alignment:
| Q |
154 |
agaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaact |
214 |
Q |
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| T |
7795631 |
agagaagcttctacaataacatcctttccacttgaccaattgcagttcttgatctcaaact |
7795571 |
T |
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