View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_20 (Length: 328)
Name: NF16793_low_20
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 1095007 - 1095312
Alignment:
| Q |
18 |
gttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttgattttctaaccgcatgc |
117 |
Q |
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| T |
1095007 |
gttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttggttttctaaccgcatgc |
1095106 |
T |
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| Q |
118 |
caaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttttatggataaactcaagcaatctttttagtttat |
217 |
Q |
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| T |
1095107 |
caaaagtagttggaaatggtatatatactttattttggtttgatttgtgggtgatcagagaaatttttatggat--actcaagcaatctttttagtttat |
1095204 |
T |
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| Q |
218 |
ttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttggg |
311 |
Q |
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| T |
1095205 |
ttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggctacatggaccggaggttgcataaaaatattttcatttggg |
1095304 |
T |
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| Q |
312 |
agaataat |
319 |
Q |
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| T |
1095305 |
aggataat |
1095312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 1116452 - 1116749
Alignment:
| Q |
29 |
ggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggt---gttcctggtagttgattttctaaccgcatgccaaaagta |
125 |
Q |
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| T |
1116452 |
ggtgtaatctagattcatcttggtgggaaaactaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtg |
1116551 |
T |
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| Q |
126 |
gttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttttatggataaactcaagcaatctttttagtttatttatcaat |
225 |
Q |
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| T |
1116552 |
gttggaaatggtatagatactttattttggtttgatttgtgggtggttggagaaacatttatggataaacttaaccaatctttttagtatatctatcaat |
1116651 |
T |
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| Q |
226 |
taataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttag------gcgaccggaggttgcataaaaatattttcatttgggagaataat |
319 |
Q |
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| T |
1116652 |
taataaacaggtgtttgtgaaagataagttgaa--tgagtggaggttcagatgacttggactggaggctgcataaaaatattttcctttgggaggataat |
1116749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 1098162 - 1098216
Alignment:
| Q |
225 |
ttaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggcgac |
280 |
Q |
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| T |
1098162 |
ttaataaacaggcatttgtggaagatatgttgaatgtga-tggaggtttaggcgac |
1098216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 1121176 - 1121253
Alignment:
| Q |
239 |
tttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
310 |
Q |
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| T |
1121176 |
tttgtggaagatatgttgaatgtgagtggaggtttaggcgacatggactggaggatgcataaaaatattttcctttgg |
1121253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 1098029 - 1098087
Alignment:
| Q |
29 |
ggtgtaatctagattcatcttgttgg-aaaaactaatgttgagtacagatagtggtggt |
86 |
Q |
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| T |
1098029 |
ggtgtaatctagatttatcttggtgggaaaaactaatgttgagtaaagatggtggtggt |
1098087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 8115592 - 8115646
Alignment:
| Q |
220 |
atcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggttta |
274 |
Q |
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| T |
8115592 |
atcaattaataaacaggtgtttgtggaagatatgttgaatgtgagtggaggttta |
8115646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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