View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_25 (Length: 296)
Name: NF16793_low_25
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 12695904 - 12695626
Alignment:
| Q |
1 |
tttcttcgtgatcaagtaaataagagcaaaagatctttctcacctactgcaagagagatgatcaaatagcagatgtacttactaagtcattaaagattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12695904 |
tttcttcgtgatcaagtaaataagagcaaaagatctttctcacttactgcaagagagatgatcaaatagcagatgtacttactaagtcattaaagattga |
12695805 |
T |
|
| Q |
101 |
tgtattatgtctagacaatttgaattaagaaggagtattgaactgcaattcaaatatagactcgaggtgaatagactccaaagaacgtcataatttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12695804 |
tgtattatgtctagacaatttgaattaagaaggagtattgaactgcaattcaaatatagactcgaggtgaatagactccaaagaacgtcataatttgttt |
12695705 |
T |
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| Q |
201 |
cacaattcttagtctttcacctaaaaatgaatcaatgattatataagaaacacgaattgacaaaaataagcgataaagt |
279 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12695704 |
cacaattcttagtcttccacctaaaaatgaatcaatgattatataagaaacacgaattgacagaaataagcgataaagt |
12695626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 15612820 - 15612746
Alignment:
| Q |
206 |
ttcttagtctttc-acctaaaaatgaatcaatgattatataagaaacacgaattgacaaaaataagcgataaagt |
279 |
Q |
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|||| |||||||| ||||||||| |||||| |||||||||||| |||| |||| |||||||||||| ||||||| |
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| T |
15612820 |
ttctaagtctttccacctaaaaacaaatcaaagattatataagatacacaaattaacaaaaataagcaataaagt |
15612746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 36072635 - 36072538
Alignment:
| Q |
1 |
tttcttcgtgatcaagtaaataagagcaaaagatctttctcacctactgcaagagagatgatcaaatagcagatgtacttactaagtcattaaagattga |
100 |
Q |
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|||||| ||||||||||||| | |||||| |||| |||||||||| || |||| |||||||||||||| | || || | |||||| |||| |||||||| |
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| T |
36072635 |
tttctttgtgatcaagtaaacatgagcaa--gatcattctcacctattggaagacagatgatcaaatagaatatatattaactaagccattgaagattga |
36072538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 36072491 - 36072448
Alignment:
| Q |
117 |
aatttgaattaagaaggagtattgaactgcaattcaaatataga |
160 |
Q |
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|||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
36072491 |
aatttgaattaagagggagtattgaattgtaattcaaatataga |
36072448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 30234386 - 30234461
Alignment:
| Q |
204 |
aattcttagtctttcacctaaaaatgaatcaatgattatataagaaacacgaattgacaaaaataagcgataaagt |
279 |
Q |
| |
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|||||| |||||| || |||| ||| ||| || |||||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
30234386 |
aattctaagtcttccatctaataataaattaaagattatataagacacaccaattgactaaaataagcaataaagt |
30234461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12447413 - 12447318
Alignment:
| Q |
1 |
tttcttcgtgatcaagtaaataagagcaaaagatctttctcacctactgcaagagagatgatcaaatagcagatgtacttactaagtcattaaagatt |
98 |
Q |
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||||||||||||||||||||||||| | |||||| |||||||||||| | ||| | ||||| | ||| |||| |||| |||||| |||| |||||| |
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| T |
12447413 |
tttcttcgtgatcaagtaaataaga--acaagatcattctcacctactacgagacatatgatttagtagtagatatactaactaagccattgaagatt |
12447318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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