View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_26 (Length: 292)
Name: NF16793_low_26
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_26 |
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| [»] scaffold0590 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 18421504 - 18421237
Alignment:
| Q |
12 |
agagaggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatgtacagtaatatttttctgttagctctttctctcctcaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18421504 |
agagaggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatgtacagtaatatttttctgttagctctttctctcctcaac |
18421405 |
T |
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| Q |
112 |
tccttcatttgtggatcagacgtcgtgtgtctcttaaactctcaatctt--tcattctcagccgttcagatcataacattactcccaccattaaaatcaa |
209 |
Q |
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| T |
18421404 |
tccttcatttgtggatcagatgtcgagtgtctcttaaactctcaatcttggtcattctcagccgttgagatcataacattactcccaccattaaaatcaa |
18421305 |
T |
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| Q |
210 |
ccttctcctcaaggttgaagccaggacaatacaatgatgttggaaattgtaacaccctaaatccttaa |
277 |
Q |
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| T |
18421304 |
ccttctcctcaaggttgaagccaggacaatacaatgatgttggaaattgtaacaccctaaatccttaa |
18421237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 34441700 - 34441826
Alignment:
| Q |
31 |
ttcacccctttgccaatcctttcatttgcctcttatagcatgtacagtaatatttttctgttagctctttctctcctcaactccttcatttgtggatcag |
130 |
Q |
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| T |
34441700 |
ttcacccttttgccaatcatttgatttgcctcttatagcatgtagaggaatatttttctgttagctttttatctcctcaactccttcatttgtggatcac |
34441799 |
T |
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| Q |
131 |
acgtcgtgtgtctcttaaactctcaat |
157 |
Q |
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| T |
34441800 |
atgccatgtgtcccgtaaactctcaat |
34441826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 18885603 - 18885771
Alignment:
| Q |
16 |
aggttcatcaaattcttcacccctttgccaatcctttcatttgcctcttatagcatgtacagtaatatttttctgttagctctttctctcctcaactcct |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||| ||||| ||||| || |||||| |||||||| |
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| T |
18885603 |
aggttcatcaaattcttcacccctttgccaatcatttgatttgcctcttatagcatg--gagaaata-ttttccgttag--ctgactctccccaactcct |
18885697 |
T |
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| Q |
116 |
tcatttgtggatcagacgtcgtgtgtctcttaaactctcaa--tctttcattctcagccgttcagatcataaca |
187 |
Q |
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| T |
18885698 |
tcatttgtggatcacatgccatatctcccttaaactctcaatttcggttattctcagccgttgagatcataaca |
18885771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 5134 - 5166
Alignment:
| Q |
200 |
ttaaaatcaaccttctcctcaaggttgaagcca |
232 |
Q |
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| T |
5134 |
ttaaaatcaaccttgtcctcaaggttgaagcca |
5166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 52938548 - 52938516
Alignment:
| Q |
200 |
ttaaaatcaaccttctcctcaaggttgaagcca |
232 |
Q |
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| T |
52938548 |
ttaaaatcaaccttgtcctcaaggttgaagcca |
52938516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 52946180 - 52946148
Alignment:
| Q |
200 |
ttaaaatcaaccttctcctcaaggttgaagcca |
232 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
52946180 |
ttaaaatcaaccttgtcctcaaggttgaagcca |
52946148 |
T |
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