View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16793_low_27 (Length: 288)

Name: NF16793_low_27
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16793_low_27
NF16793_low_27
[»] chr3 (31 HSPs)
chr3 (67-270)||(52823843-52824046)
chr3 (1-64)||(54868932-54868995)
chr3 (1-67)||(53982008-53982074)
chr3 (1-64)||(11095390-11095453)
chr3 (1-64)||(49607414-49607477)
chr3 (1-65)||(33644199-33644263)
chr3 (1-64)||(17470405-17470468)
chr3 (2-64)||(24699992-24700054)
chr3 (1-59)||(52629305-52629363)
chr3 (1-69)||(26141569-26141637)
chr3 (1-64)||(27714928-27714991)
chr3 (1-63)||(31456690-31456752)
chr3 (3-64)||(8076393-8076454)
chr3 (1-64)||(14623876-14623939)
chr3 (5-64)||(33118892-33118951)
chr3 (1-64)||(36707461-36707524)
chr3 (1-64)||(47531865-47531928)
chr3 (5-64)||(35536626-35536685)
chr3 (1-60)||(48587128-48587187)
chr3 (1-64)||(51419397-51419460)
chr3 (1-59)||(26754700-26754758)
chr3 (2-64)||(36331416-36331478)
chr3 (5-65)||(30801774-30801834)
chr3 (1-65)||(45058590-45058653)
chr3 (5-64)||(8956762-8956821)
chr3 (1-64)||(11347959-11348022)
chr3 (1-64)||(41080709-41080771)
chr3 (1-63)||(13898092-13898154)
chr3 (1-65)||(20764952-20765016)
chr3 (1-64)||(9562999-9563062)
chr3 (5-64)||(41189805-41189864)
[»] chr7 (34 HSPs)
chr7 (1-64)||(4999551-4999614)
chr7 (1-66)||(19329840-19329905)
chr7 (1-61)||(3783998-3784058)
chr7 (1-69)||(7389384-7389452)
chr7 (1-64)||(19436224-19436287)
chr7 (3-66)||(35137531-35137594)
chr7 (1-64)||(36361950-36362013)
chr7 (1-65)||(38267039-38267103)
chr7 (1-64)||(3434562-3434625)
chr7 (1-64)||(8080420-8080483)
chr7 (1-64)||(10343600-10343663)
chr7 (1-64)||(36362026-36362089)
chr7 (3-64)||(35468894-35468955)
chr7 (1-64)||(22343361-22343424)
chr7 (1-64)||(38837217-38837280)
chr7 (1-64)||(40957707-40957770)
chr7 (1-66)||(8238210-8238276)
chr7 (1-66)||(3694365-3694430)
chr7 (3-64)||(18207180-18207241)
chr7 (1-64)||(38044197-38044260)
chr7 (1-64)||(41915741-41915804)
chr7 (1-64)||(46374839-46374902)
chr7 (1-59)||(35522881-35522939)
chr7 (15-64)||(11044188-11044237)
chr7 (5-66)||(21234399-21234460)
chr7 (1-65)||(32564463-32564527)
chr7 (3-63)||(32951532-32951592)
chr7 (1-65)||(39255960-39256024)
chr7 (1-65)||(41423681-41423745)
chr7 (8-66)||(31735882-31735940)
chr7 (3-64)||(40846152-40846213)
chr7 (1-64)||(36208173-36208236)
chr7 (1-64)||(46033838-46033901)
chr7 (1-59)||(2318280-2318338)
[»] chr8 (28 HSPs)
chr8 (1-66)||(504158-504223)
chr8 (1-67)||(23122634-23122700)
chr8 (1-66)||(15197331-15197396)
chr8 (5-74)||(34012337-34012406)
chr8 (1-64)||(1179977-1180040)
chr8 (1-64)||(12831047-12831110)
chr8 (1-64)||(14547922-14547985)
chr8 (1-65)||(40423980-40424044)
chr8 (1-64)||(37038479-37038542)
chr8 (3-66)||(43414620-43414683)
chr8 (1-63)||(5957831-5957893)
chr8 (5-69)||(20074975-20075039)
chr8 (1-64)||(16383377-16383440)
chr8 (1-64)||(34307216-34307279)
chr8 (1-64)||(44507124-44507187)
chr8 (1-59)||(10621124-10621182)
chr8 (1-65)||(15048219-15048282)
chr8 (1-69)||(24307830-24307898)
chr8 (1-64)||(4854900-4854963)
chr8 (1-64)||(24307629-24307692)
chr8 (1-64)||(30479511-30479574)
chr8 (5-64)||(10284672-10284731)
chr8 (26-63)||(9122196-9122233)
chr8 (1-64)||(17443825-17443888)
chr8 (1-64)||(32032725-32032787)
chr8 (3-45)||(8841471-8841513)
chr8 (3-64)||(14055631-14055692)
chr8 (1-69)||(15258966-15259034)
[»] chr5 (23 HSPs)
chr5 (1-65)||(35785198-35785262)
chr5 (5-74)||(33149679-33149748)
chr5 (1-61)||(18520921-18520981)
chr5 (1-64)||(2740274-2740337)
chr5 (1-64)||(36732979-36733042)
chr5 (5-63)||(36875644-36875702)
chr5 (1-67)||(40145404-40145470)
chr5 (1-66)||(14831812-14831877)
chr5 (1-66)||(28177773-28177838)
chr5 (1-66)||(42414339-42414404)
chr5 (1-64)||(6679698-6679761)
chr5 (1-64)||(13811652-13811715)
chr5 (1-64)||(35943929-35943992)
chr5 (1-64)||(3921302-3921365)
chr5 (1-64)||(2252205-2252268)
chr5 (1-65)||(26720515-26720579)
chr5 (1-65)||(26990264-26990328)
chr5 (1-69)||(39688934-39689002)
chr5 (1-59)||(10356639-10356698)
chr5 (1-64)||(15409647-15409710)
chr5 (3-64)||(20073555-20073616)
chr5 (1-64)||(33825361-33825424)
chr5 (3-65)||(6260040-6260102)
[»] chr2 (33 HSPs)
chr2 (1-69)||(28381692-28381760)
chr2 (1-65)||(40701477-40701541)
chr2 (1-64)||(7465772-7465835)
chr2 (1-64)||(17473020-17473083)
chr2 (1-64)||(9058480-9058543)
chr2 (1-64)||(10249419-10249482)
chr2 (1-64)||(32505685-32505748)
chr2 (1-64)||(33436211-33436274)
chr2 (3-64)||(33436139-33436200)
chr2 (1-65)||(4060684-4060748)
chr2 (1-61)||(28863458-28863518)
chr2 (1-66)||(13438341-13438406)
chr2 (1-66)||(19930857-19930922)
chr2 (1-66)||(27864702-27864767)
chr2 (1-66)||(40613939-40614004)
chr2 (1-64)||(5574525-5574588)
chr2 (1-64)||(30915463-30915526)
chr2 (1-64)||(38273179-38273242)
chr2 (1-64)||(38882851-38882913)
chr2 (1-66)||(43490119-43490184)
chr2 (1-64)||(20700815-20700878)
chr2 (1-64)||(26891541-26891604)
chr2 (5-63)||(41575138-41575196)
chr2 (1-65)||(17820041-17820105)
chr2 (1-48)||(13365369-13365416)
chr2 (1-64)||(42257193-42257256)
chr2 (1-46)||(2997524-2997569)
chr2 (1-64)||(2533124-2533186)
chr2 (3-58)||(3439985-3440040)
chr2 (5-64)||(36168836-36168895)
chr2 (1-64)||(38732354-38732417)
chr2 (1-64)||(45097772-45097835)
chr2 (41-69)||(28863614-28863642)
[»] chr1 (28 HSPs)
chr1 (1-67)||(27564772-27564838)
chr1 (1-65)||(9474913-9474977)
chr1 (1-64)||(2581915-2581978)
chr1 (1-65)||(48716319-48716383)
chr1 (1-64)||(3000319-3000382)
chr1 (1-64)||(38632358-38632421)
chr1 (3-66)||(47452359-47452422)
chr1 (1-64)||(8346425-8346488)
chr1 (1-64)||(38595154-38595217)
chr1 (1-64)||(41758805-41758868)
chr1 (1-64)||(51898720-51898783)
chr1 (1-66)||(37649196-37649261)
chr1 (1-65)||(50591037-50591101)
chr1 (1-64)||(5959037-5959100)
chr1 (1-64)||(32813247-32813310)
chr1 (1-61)||(44548413-44548473)
chr1 (1-64)||(50630458-50630521)
chr1 (1-66)||(26440732-26440797)
chr1 (1-61)||(26274435-26274495)
chr1 (1-65)||(41608530-41608594)
chr1 (1-64)||(43132-43195)
chr1 (1-64)||(23597128-23597191)
chr1 (1-64)||(49811564-49811627)
chr1 (1-63)||(11152415-11152476)
chr1 (1-59)||(44453984-44454042)
chr1 (1-74)||(45044597-45044670)
chr1 (1-64)||(37926475-37926538)
chr1 (1-66)||(47748441-47748505)
[»] chr6 (20 HSPs)
chr6 (1-66)||(17598552-17598617)
chr6 (1-69)||(32869673-32869741)
chr6 (1-64)||(29857827-29857890)
chr6 (1-61)||(22880695-22880755)
chr6 (2-64)||(6209503-6209565)
chr6 (1-65)||(15508061-15508125)
chr6 (1-65)||(31109437-31109501)
chr6 (1-64)||(15990079-15990142)
chr6 (1-64)||(30341397-30341460)
chr6 (1-64)||(11427616-11427681)
chr6 (1-66)||(31953067-31953132)
chr6 (1-64)||(31976248-31976311)
chr6 (5-64)||(15832577-15832636)
chr6 (1-60)||(28536523-28536582)
chr6 (12-64)||(31110807-31110859)
chr6 (1-64)||(22422055-22422118)
chr6 (1-63)||(946377-946439)
chr6 (5-59)||(9379753-9379807)
chr6 (1-65)||(4231547-4231611)
chr6 (1-61)||(23128164-23128224)
[»] chr4 (28 HSPs)
chr4 (1-65)||(6034043-6034107)
chr4 (1-64)||(41236347-41236410)
chr4 (1-65)||(11511499-11511563)
chr4 (1-64)||(480484-480547)
chr4 (1-64)||(23608235-23608298)
chr4 (1-64)||(48183086-48183149)
chr4 (1-64)||(50052465-50052528)
chr4 (3-65)||(54473572-54473634)
chr4 (1-66)||(3481652-3481717)
chr4 (3-64)||(29239886-29239947)
chr4 (1-65)||(50526208-50526272)
chr4 (1-64)||(29234282-29234345)
chr4 (1-66)||(40574777-40574842)
chr4 (5-64)||(24995148-24995207)
chr4 (1-64)||(42044404-42044467)
chr4 (1-64)||(55079751-55079814)
chr4 (1-64)||(55475191-55475254)
chr4 (1-65)||(31910191-31910255)
chr4 (1-64)||(19670753-19670816)
chr4 (1-69)||(29547996-29548064)
chr4 (1-64)||(32766958-32767021)
chr4 (1-64)||(47986208-47986271)
chr4 (1-64)||(50813929-50813992)
chr4 (1-46)||(17983780-17983825)
chr4 (1-73)||(18924532-18924604)
chr4 (1-56)||(29589777-29589831)
chr4 (1-64)||(29977885-29977948)
chr4 (5-64)||(47104544-47104603)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-64)||(4029-4092)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-66)||(966-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-66)||(966-1031)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-64)||(10146-10209)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-48)||(152514-152561)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 67 - 270
Target Start/End: Complemental strand, 52824046 - 52823843
Alignment:
Q  67 aaacaaaacctcttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824046 aaacaaaacctcttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactat 52823947  T
Q  167 atagtctctttctatatataacaagtttagtatgcataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggt 266  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52823946 atagtctctttctatatataacaagattagtatacataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggt 52823847  T
Q  267 ggtc 270  Q
    ||||    
T  52823846 ggtc 52823843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 54868932 - 54868995
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54868932 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 53982074 - 53982008
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcata 67  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  53982074 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcata 53982008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11095390 - 11095453
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  11095390 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49607477 - 49607414
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  49607477 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33644263 - 33644199
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  33644263 tcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactca 33644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17470468 - 17470405
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  17470468 tcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 24699992 - 24700054
Alignment:
Q  2 cagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  24699992 cagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52629363 - 52629305
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  52629363 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26141569 - 26141637
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| |||||||||    
T  26141569 tcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcataaa 26141637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27714928 - 27714991
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||    
T  27714928 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31456752 - 31456690
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  31456752 tcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 8076454 - 8076393
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||    
T  8076454 agatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14623876 - 14623939
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  14623876 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 33118892 - 33118951
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||    
T  33118892 atttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36707461 - 36707524
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| ||||||||| || |||||||| |||||||||||||||||    
T  36707461 tcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47531928 - 47531865
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  47531928 tcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 35536685 - 35536626
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||| ||||||||||||| ||||||||||||  ||||| |||||||||||||||||||    
T  35536685 atttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48587128 - 48587187
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatt 60  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||||| |||||||||||||    
T  48587128 tcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51419397 - 51419460
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||| ||||    
T  51419397 tcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26754758 - 26754700
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||| |||| || |||||||||||| ||||||||||||||| |||||    
T  26754758 tcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 36331416 - 36331478
Alignment:
Q  2 cagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||| ||||    
T  36331416 cagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 30801774 - 30801834
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||| ||||| ||||||||  || |||||||||||||||||||||| ||||    
T  30801774 atttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcattgctca 30801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45058590 - 45058653
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||||| |||||||||| |||||    
T  45058590 tcagatttttatgtgggtgtcaag-ggtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 8956821 - 8956762
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||| ||||||||||||| | ||||||||||  ||||| |||||||||||||||||||    
T  8956821 atttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11347959 - 11348022
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| | ||||||| || |||||| |||||||||||||| ||||    
T  11347959 tcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41080771 - 41080709
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||| |||||||||||| ||||| |||| | |||||| |||||||||||||||||||    
T  41080771 tcagatttttgcgtgggtgtcaaagggtgttttgcta-ctaaggatgtctatgtatcattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13898092 - 13898154
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||| ||||||||||||  |||||||||||| |||||| ||| ||| ||||||||||    
T  13898092 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20764952 - 20765016
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||| |||  ||||||| ||| |||||| ||||||||| |||| |||||    
T  20764952 tcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9563062 - 9562999
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| | ||| ||||||| | ||||||| ||||||| ||||| |||||||||||||||    
T  9563062 tcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcattactc 9562999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 41189805 - 41189864
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||| ||||||||||||| | |||||||||| |||||| ||| |||||||||| ||||    
T  41189805 atttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4999551 - 4999614
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4999551 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19329905 - 19329840
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  19329905 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactcat 19329840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3784058 - 3783998
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  3784058 tcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7389452 - 7389384
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||    
T  7389452 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcttaaa 7389384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19436224 - 19436287
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||    
T  19436224 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 35137594 - 35137531
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||    
T  35137594 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactcat 35137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36361950 - 36362013
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  36361950 tcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38267103 - 38267039
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  38267103 tcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3434625 - 3434562
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  3434625 tcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8080420 - 8080483
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8080420 tcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10343600 - 10343663
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||    
T  10343600 tcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactc 10343663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36362089 - 36362026
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||    
T  36362089 tcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 35468894 - 35468955
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactc 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22343424 - 22343361
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  22343424 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38837280 - 38837217
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| |||||  || |||||||||||| ||||||||||||||||||||||||||    
T  38837280 tcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40957770 - 40957707
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||| |||||  ||||||||||| ||||| ||||||||||||||||||||    
T  40957770 tcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8238276 - 8238210
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatcta-agggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||| ||||||    
T  8238276 tcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactcat 8238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3694430 - 3694365
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||| ||||||||||||| || |||||||||| ||| |||||||| ||||    
T  3694430 tcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcattattcat 3694365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 18207241 - 18207180
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||| ||||    
T  18207241 agatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38044260 - 38044197
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  38044260 tcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41915804 - 41915741
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  41915804 tcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46374839 - 46374902
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||| |||||||||||||| ||||    
T  46374839 tcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35522939 - 35522881
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||||||| ||| ||||||||||||  ||||| ||||||||||||||    
T  35522939 tcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 11044237 - 11044188
Alignment:
Q  15 gggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 21234460 - 21234399
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||| |||||||| ||||||||| || |||||| |||||||||||||| ||||||    
T  21234460 atttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactcat 21234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32564463 - 32564527
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||  |||||||||||| |||||  ||| |||||||||| |||||    
T  32564463 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactca 32564527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 32951532 - 32951592
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||||| ||| ||| | ||||||| |||||||| |||||||||||||||||||    
T  32951532 agatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcattact 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39255960 - 39256024
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||| ||||| ||||  |||||||||||| |||||| |||||||||||||| |||||    
T  39255960 tcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactca 39256024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41423745 - 41423681
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||  ||||||| ||||||||| |||||||| | |||||||||||||| |||||    
T  41423745 tcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataactca 41423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 31735940 - 31735882
Alignment:
Q  8 tttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||||| |||  ||||||||||| |||||| |||||||||||||| ||||||    
T  31735940 tttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactcat 31735882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||  |||||||||||| |||||| ||| |||||||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36208236 - 36208173
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||| ||||||||||||||||||    |||||| ||| ||||||||||||||||||||| ||||    
T  36208236 tcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46033838 - 46033901
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||| |||||||||||| |||||  | |||||||||||| ||||    
T  46033838 tcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2318280 - 2318338
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    ||||||||||||||||||||||| |||||| |||||| ||| || |||  |||||||||    
T  2318280 tcagatttttgtgtgggtgtcaagaggtgtcttgccacctatggttgttaatgtatcat 2318338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 504158 - 504223
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  504158 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcat 504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23122634 - 23122700
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcata 67  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  23122634 tcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactcata 23122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15197396 - 15197331
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  15197396 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcat 15197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 34012337 - 34012406
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaacaaaa 74  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  34012337 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaaaaaaa 34012406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1179977 - 1180040
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  1179977 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12831110 - 12831047
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  12831110 tcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14547985 - 14547922
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  14547985 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactc 14547922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40423980 - 40424044
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||    
T  40423980 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37038542 - 37038479
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||    
T  37038542 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 43414620 - 43414683
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||    
T  43414620 agatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactcat 43414683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5957893 - 5957831
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||||||||||||||| |||||||||||| |||||  ||||||||||||||||||    
T  5957893 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 20074975 - 20075039
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||| |||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||    
T  20074975 atttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactcataaa 20075039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16383440 - 16383377
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  16383440 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34307279 - 34307216
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  34307279 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44507124 - 44507187
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| |||  ||||||| ||| ||||||||||||||||||||||||||    
T  44507124 tcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10621124 - 10621182
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||    
T  10621124 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15048219 - 15048282
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||| |||||    
T  15048219 tcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24307830 - 24307898
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||||||  | |||||||||| |||||||||| |||||||||| |||| ||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactcttaaa 24307898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4854900 - 4854963
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||| ||||| ||| |||||||||||| |||||| |||||||||||||||||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24307692 - 24307629
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  | |||||||||| |||||||||| |||||||||| ||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30479511 - 30479574
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||| |||||||||||| |||||||||| |||||||||| ||||    
T  30479511 tcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 10284672 - 10284731
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||  |||||||| ||  |||||||||||||||||||| ||||    
T  10284672 atttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 9122233 - 9122196
Alignment:
Q  26 ggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9122233 ggtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17443888 - 17443825
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||| |||| || | |||||||| || |||||| |||||||||||||| ||||    
T  17443888 tcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataactc 17443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32032787 - 32032725
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| |||| || | |||||||||| |||||||||| |||||||||| ||||    
T  32032787 tcagatttttgtgtggatgtc-aaggatgtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8841471 - 8841513
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaaggg 45  Q
    |||||||||||||||||||||| |||||| ||||| |||||||    
T  8841471 agatttttgtgtgggtgtcaaagggtgtactgccacctaaggg 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 14055631 - 14055692
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||   |||||||| || ||||||||||| ||||||||| ||||    
T  14055631 agatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15258966 - 15259034
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||| ||||| |||| |  | |||||||||||||||| || |||||||||||| |||| ||||    
T  15258966 tcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactcttaaa 15259034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35785262 - 35785198
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35785262 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 35785198  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 33149679 - 33149748
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaacaaaa 74  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  33149679 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaaaaaaa 33149748  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18520921 - 18520981
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  18520921 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2740337 - 2740274
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  2740337 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36732979 - 36733042
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  36732979 tcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 36875644 - 36875702
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40145470 - 40145404
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcata 67  Q
    |||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||    
T  40145470 tcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactcata 40145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14831877 - 14831812
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  14831877 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcat 14831812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28177838 - 28177773
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  28177838 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactcat 28177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42414339 - 42414404
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||    
T  42414339 tcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactcat 42414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6679761 - 6679698
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  6679761 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13811715 - 13811652
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||    
T  13811715 tcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35943929 - 35943992
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  35943929 tcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3921302 - 3921365
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  3921302 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2252205 - 2252268
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||| ||| |||||||||| ||||    
T  2252205 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26720579 - 26720515
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||| ||| ||||| ||| |||||||||||| |||||| |||||||||||||| |||||    
T  26720579 tcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26990328 - 26990264
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||| ||| ||||| ||| |||||||||||| |||||| |||||||||||||| |||||    
T  26990328 tcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39688934 - 39689002
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||||||  | ||||||||||  ||||||||| |||||||||| |||| ||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactcttaaa 39689002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaagg-tgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||||||||||  || |||||||||| |||||| ||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15409647 - 15409710
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||||   ||||||| || |||||| |||||||||||||| ||||    
T  15409647 tcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 20073555 - 20073616
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||| |||| |||||||| ||||||||| ||||||| | ||||||| |||||||||||    
T  20073555 agatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33825361 - 33825424
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||   ||||||||||| |||||  |||||||| ||||||||||    
T  33825361 tcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 6260040 - 6260102
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||| |||||||| ||| ||||||||| || ||| || ||| ||||||||||||||||    
T  6260040 agatttttgcgtgggtgttaaagggtgtattgtcacctatggttgtgtatgtatcattactca 6260102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28381692 - 28381760
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  28381692 tcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactcataaa 28381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40701541 - 40701477
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40701541 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7465772 - 7465835
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7465772 tcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17473083 - 17473020
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17473083 tcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9058543 - 9058480
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  9058543 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10249419 - 10249482
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  10249419 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32505685 - 32505748
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  32505685 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33436274 - 33436211
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33436274 tcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 33436139 - 33436200
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33436139 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4060748 - 4060684
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  4060748 tcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactca 4060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28863518 - 28863458
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  28863518 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13438406 - 13438341
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||    
T  13438406 tcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactcat 13438341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19930857 - 19930922
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  19930857 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcattattcat 19930922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27864767 - 27864702
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  27864767 tcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactcat 27864702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40613939 - 40614004
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||    
T  40613939 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactcat 40614004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5574525 - 5574588
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  5574525 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

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Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30915526 - 30915463
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  30915526 tcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38273179 - 38273242
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||| ||||    
T  38273179 tcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38882851 - 38882913
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  38882851 tcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43490184 - 43490119
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||  ||||||||| || |||||||||| |||||||||| ||||||    
T  43490184 tcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactcat 43490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20700878 - 20700815
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| || |||||| ||||||||||||  ||||| |||||||||||||||||||    
T  20700878 tcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26891541 - 26891604
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||| ||||||||||| ||||    
T  26891541 tcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 41575196 - 41575138
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||  ||||||| |||||||| |||||||||| ||||||||||||||||||    
T  41575196 atttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17820041 - 17820105
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||  |||||||||||| |||  | |||||||||||||| |||||    
T  17820041 tcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactca 17820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13365416 - 13365369
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgt 48  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||    
T  13365416 tcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgt 13365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42257256 - 42257193
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | |||||||||| |||| | |||||||||||||| ||||    
T  42257256 tcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2997524 - 2997569
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggt 46  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  2997524 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2533186 - 2533124
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| | ||||||||||  ||||| |||||||||||||| ||||    
T  2533186 tcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 3440040 - 3439985
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatca 58  Q
    ||||||||||||||||||| |   ||||||||||| ||||||||||||| ||||||    
T  3440040 agatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 36168895 - 36168836
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||| || ||| | ||||||| ||||||||| |||||||||||||| ||||    
T  36168895 atttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38732417 - 38732354
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  | ||||||| ||  ||||||||| |||||||||| ||||    
T  38732417 tcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45097772 - 45097835
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||| ||||||||||  | |||||||||| |||||| ||| |||||||||| ||||    
T  45097772 tcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 28863614 - 28863642
Alignment:
Q  41 aagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||||||||||||    
T  28863614 aagggtgtctatgtatcattactcataaa 28863642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27564772 - 27564838
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcata 67  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  27564772 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactcata 27564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9474913 - 9474977
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  9474913 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 9474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2581978 - 2581915
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  2581978 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48716319 - 48716383
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  48716319 tcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3000382 - 3000319
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  3000382 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38632358 - 38632421
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  38632358 tcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 47452359 - 47452422
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  47452359 agatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcat 47452422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8346425 - 8346488
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||    
T  8346425 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38595217 - 38595154
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  38595217 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41758868 - 41758805
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  41758868 tcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51898720 - 51898783
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||    
T  51898720 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37649261 - 37649196
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||||||||||||||||  ||||||||||| |||| | |||||||||||||||||||||    
T  37649261 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactcat 37649196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50591037 - 50591101
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| |||||    
T  50591037 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 50591101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5959037 - 5959100
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||||| ||||    
T  5959037 tcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32813310 - 32813247
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| ||||    
T  32813310 tcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44548413 - 44548473
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||||||||||| ||||| |||||||||||| |||| | ||||||||||||||||    
T  44548413 tcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50630521 - 50630458
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||| | |||||||||| |||||||| |||||||||||||||||    
T  50630521 tcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26440797 - 26440732
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||| |||| | ||||||    
T  26440797 tcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaactcat 26440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26274495 - 26274435
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||| ||||||| | ||||||||||  ||||||||||||||||||||||    
T  26274495 tcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcatta 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41608530 - 41608594
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||| |||||||  |||||||||||| |||||| ||| |||||||||| |||||    
T  41608530 tcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactca 41608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43195 - 43132
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | ||||||| |  |||||  |||||||||||||||||||    
T  43195 tcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23597128 - 23597191
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||| |||||  ||||||||||| |||| | |||||||||||||||||||    
T  23597128 tcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 49811564 - 49811627
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| ||||||||| || |||||| ||||||| |||||| ||||    
T  49811564 tcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactc 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11152415 - 11152476
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    |||||||||||||||| |||| || |||||||||||| |||| ||||||||||| ||||||||    
T  11152415 tcagatttttgtgtggatgtcgaagggtgtattgccacctaa-ggtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44454042 - 44453984
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||||||||||||| |||| || ||||||||||  ||| ||||||||||||||||    
T  44454042 tcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45044597 - 45044670
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaacaaaa 74  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||   | |||||||||| |||| |||| ||||    
T  45044597 tcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactcttaaaaaaaa 45044670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37926475 - 37926538
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||||| |||||||||| |||| | | |||||||||||| ||||    
T  37926475 tcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47748505 - 47748441
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||| | ||||||||||  |||||||||||| |||||||| | |||||||||| ||||||    
T  47748505 tcagatttttatatgggtgtcaag-ggtgtattgccacctaagggtatttatgtatcataactcat 47748441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17598617 - 17598552
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  17598617 tcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactcat 17598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32869741 - 32869673
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  32869741 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactcataaa 32869673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29857890 - 29857827
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  29857890 tcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22880695 - 22880755
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22880695 tcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 6209503 - 6209565
Alignment:
Q  2 cagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  6209503 cagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15508061 - 15508125
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| |||||    
T  15508061 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31109437 - 31109501
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||  |||||||||||    
T  31109437 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactca 31109501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15990079 - 15990142
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  15990079 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30341397 - 30341460
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  30341397 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11427681 - 11427616
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatcta--agggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||| |||  |||||||||||||||||||||||    
T  11427681 tcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31953067 - 31953132
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||| ||||||||||||  |||||||||||| |||||| ||||||| |||||||||||||    
T  31953067 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactcat 31953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31976311 - 31976248
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||| ||| |||||||| |||||| |||||||||||||| ||||    
T  31976311 tcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 15832636 - 15832577
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| | | ||||| || |||| |||||||||||||||||||||    
T  15832636 atttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactc 15832577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28536523 - 28536582
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatt 60  Q
    |||||||||||||||||||||||  | |||||||||| |||||| ||| |||||||||||    
T  28536523 tcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 31110807 - 31110859
Alignment:
Q  12 tgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||| ||||    
T  31110807 tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22422055 - 22422118
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||| |||||| || ||||||| || | |||||||| |||||| |||||||||||||||||||    
T  22422055 tcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactc 22422118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 946439 - 946377
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattact 63  Q
    ||||||||||| || ||||||||| ||||||||  || |||||| |||||||||||| |||||    
T  946439 tcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 9379753 - 9379807
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 59  Q
    |||||||| ||||||||||  | ||||||| ||||||||| ||||||||||||||    
T  9379753 atttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4231611 - 4231547
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||||||| |||  |||||||||||| |||| | ||| |||| ||||| |||||    
T  4231611 tcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactca 4231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23128164 - 23128224
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 61  Q
    |||||||||||||||||||||||| | ||||||  ||  ||| ||||||||| ||||||||    
T  23128164 tcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6034107 - 6034043
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  6034107 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 6034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41236410 - 41236347
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  41236410 tcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11511499 - 11511563
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  11511499 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 11511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 480484 - 480547
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  480484 tcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23608298 - 23608235
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  23608298 tcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48183086 - 48183149
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  48183086 tcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50052465 - 50052528
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  50052465 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 54473572 - 54473634
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  54473572 agatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactca 54473634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3481717 - 3481652
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    ||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||||||||    
T  3481717 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactcat 3481652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 29239947 - 29239886
Alignment:
Q  3 agatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  29239947 agatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50526208 - 50526272
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  50526208 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactca 50526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29234282 - 29234345
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29234282 tcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40574842 - 40574777
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||| ||||||    
T  40574842 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactcat 40574777  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 24995148 - 24995207
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  24995148 atttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactc 24995207  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42044404 - 42044467
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||  || | |||||||||| ||||||||||||||||||||||||||    
T  42044404 tcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactc 42044467  T

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Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 55079751 - 55079814
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  55079751 tcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55475254 - 55475191
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||| ||||    
T  55475254 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

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Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31910255 - 31910191
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactca 65  Q
    ||||||||||||||||||||||||  |||||||| || |||||| |||||||||||||| |||||    
T  31910255 tcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactca 31910191  T

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Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19670753 - 19670816
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||| |||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  19670753 tcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

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Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29547996 - 29548064
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaa 69  Q
    |||||||||||||||||||||||  | |||||||||| |||||| ||| |||||||||| |||| ||||    
T  29547996 tcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactcttaaa 29548064  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32767021 - 32766958
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||| ||||||||||  |||||||||||| ||||| |||| |||||||||| ||||    
T  32767021 tcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47986271 - 47986208
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||  | |||||||||| |||||||||| |||||||||| ||||    
T  47986271 tcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 47986208  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50813929 - 50813992
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||  |||||||| ||| ||||| |||| |||||||||| ||||    
T  50813929 tcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactc 50813992  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17983780 - 17983825
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggt 46  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  17983780 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18924532 - 18924604
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcataaacaaa 73  Q
    |||||||||||||||| | ||||  |||||||||||| |||||||| | |||| ||||| |||||||| ||||    
T  18924532 tcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactcataatcaaa 18924604  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29589777 - 29589831
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtat 56  Q
    |||||||||||||||||||||||  ||||||||| || |||||||||| |||||||    
T  29589777 tcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtttatgtat 29589831  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29977948 - 29977885
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||  |||||||||||| ||| || | | |||||||||||||||    
T  29977948 tcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactc 29977885  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 47104603 - 47104544
Alignment:
Q  5 atttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||| |  |||||||| ||||||||  ||||||| |||||||||||    
T  47104603 atttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactc 47104544  T

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Target: scaffold0237 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4092 - 4029
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  4092 tcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

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Target: scaffold1268 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 966 - 1031
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||| ||||||||||| ||| ||| |||||||||||| |||| | |||||||||||||||||||||    
T  966 tcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactcat 1031  T

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Target: scaffold1267 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 966 - 1031
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactcat 66  Q
    |||| ||||||||||| ||| ||| |||||||||||| |||| | |||||||||||||||||||||    
T  966 tcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactcat 1031  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10146 - 10209
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||| | |||||||||| |||| |||||||||||||||| ||||    
T  10146 tcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 152561 - 152514
Alignment:
Q  1 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgt 48  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||    
T  152561 tcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgt 152514  T

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