View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_28 (Length: 268)
Name: NF16793_low_28
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 375940 - 376125
Alignment:
| Q |
12 |
tgaaatgaatatcgagtataaaacagcagttgtggaggatggtggaattcaggttggtcaattgttctttcatgatccagatggatatatgattgaaatg |
111 |
Q |
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| T |
375940 |
tgaaatgaatattgagtataaaacagcagttgtggaggatggtggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatg |
376039 |
T |
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| Q |
112 |
tgcaattgccaaaatctccctgtgcttcctatttccacttgccctctaaagcagccaactaatcaagcaccagtacccttttatgg |
197 |
Q |
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| T |
376040 |
tgcaattgccaaaatctccctgtgcttcctatttccacttgccctctaaagcagccaactaatcaagcaccagtacccttttatgg |
376125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 44544876 - 44544811
Alignment:
| Q |
54 |
tggaattcaggttggtcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
119 |
Q |
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| T |
44544876 |
tggaattcaagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattg |
44544811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 44555518 - 44555453
Alignment:
| Q |
54 |
tggaattcaggttggtcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
119 |
Q |
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| T |
44555518 |
tggaattcaagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattg |
44555453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 55685 - 55637
Alignment:
| Q |
220 |
ttatgaagataaatgatatggtgtatttaattagagagaatatataatt |
268 |
Q |
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| T |
55685 |
ttatgaagataaatgatatggtgcaattaattagagagaatatataatt |
55637 |
T |
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