View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_34 (Length: 211)
Name: NF16793_low_34
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 43208322 - 43208151
Alignment:
| Q |
23 |
acgacttctggaactttaatgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatctatcaggcaccattcgt |
122 |
Q |
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| T |
43208322 |
acgacttctggaactttaatgtaaggctcctcatagcttggaatagaagcgaggatagcatccttgtcaaggatataccaatctatcaggcaccattcat |
43208223 |
T |
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| Q |
123 |
cggttattcaatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
194 |
Q |
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| T |
43208222 |
cggttattcaatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
43208151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 43187524 - 43187355
Alignment:
| Q |
25 |
gacttctggaactttaatgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatctatcaggcaccattcgtcg |
124 |
Q |
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| T |
43187524 |
gacttttggaactttaatgtagggctcctcataggttggaatggaagcgaggatggcatccctgtcaaggatatagcaatctatcaggcaccgtcagtcg |
43187425 |
T |
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| Q |
125 |
gttattcaatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
194 |
Q |
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| T |
43187424 |
gctatgcaatatgcccaatttacaaataatgaataaacaactcaccgttgatcaaatgtttcaggagtat |
43187355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 43189528 - 43189368
Alignment:
| Q |
31 |
tggaactttaatgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatctatcaggcaccattcgtcggttatt |
130 |
Q |
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| T |
43189528 |
tggaactgtgatgtaaggctattcatagcttggaacggaagcgatgatggcatccctgtcaaggatataccactctattaggcaccattagttggttatc |
43189429 |
T |
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| Q |
131 |
caatatacctgattaacaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
194 |
Q |
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| T |
43189428 |
caaaatgcccaatttaca---aatgaataaacagctcaccttgggtcaaatgtttcaggagtat |
43189368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 39852160 - 39852112
Alignment:
| Q |
146 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
194 |
Q |
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| T |
39852160 |
acaaataatgaataaacaactcaccgttgatcaaatgttttaggagtat |
39852112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 39852252 - 39852177
Alignment:
| Q |
31 |
tggaacttta-atgtaaggctcctcatagcttggaatagaagcgagaatggcatccttgtcaaggatataccaatc |
105 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| | ||||||||| |||||| ||||||| |||| |
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| T |
39852252 |
tggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatc |
39852177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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