View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16793_low_4 (Length: 561)

Name: NF16793_low_4
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16793_low_4
NF16793_low_4
[»] chr4 (7 HSPs)
chr4 (7-546)||(4520492-4521024)
chr4 (495-540)||(2828458-2828503)
chr4 (496-544)||(35997810-35997858)
chr4 (496-546)||(44558567-44558617)
chr4 (495-528)||(43778388-43778421)
chr4 (496-540)||(42879275-42879319)
chr4 (496-540)||(44992808-44992852)
[»] chr7 (8 HSPs)
chr7 (494-546)||(46812656-46812708)
chr7 (496-546)||(33037693-33037743)
chr7 (496-546)||(33038871-33038921)
chr7 (496-546)||(38614833-38614883)
chr7 (493-546)||(40785589-40785642)
chr7 (493-528)||(45465243-45465278)
chr7 (496-546)||(2168875-2168925)
chr7 (496-540)||(30108565-30108609)
[»] chr6 (3 HSPs)
chr6 (434-473)||(2143092-2143131)
chr6 (493-543)||(30639608-30639658)
chr6 (496-540)||(35174391-35174435)
[»] chr3 (6 HSPs)
chr3 (494-537)||(23887196-23887239)
chr3 (485-540)||(45897039-45897094)
chr3 (496-546)||(1847686-1847736)
chr3 (496-546)||(39641913-39641963)
chr3 (496-546)||(2977403-2977453)
chr3 (496-546)||(24382967-24383017)
[»] chr8 (3 HSPs)
chr8 (496-546)||(32822361-32822411)
chr8 (501-546)||(461181-461226)
chr8 (496-540)||(40019156-40019200)
[»] chr2 (9 HSPs)
chr2 (495-544)||(11315411-11315460)
chr2 (484-544)||(41185-41245)
chr2 (494-546)||(361443-361495)
chr2 (496-546)||(15432328-15432378)
chr2 (497-546)||(25619661-25619710)
chr2 (495-544)||(42880854-42880903)
chr2 (496-540)||(28248222-28248266)
chr2 (494-546)||(37417271-37417323)
chr2 (496-544)||(37418812-37418860)
[»] chr5 (3 HSPs)
chr5 (496-544)||(38596868-38596916)
chr5 (496-546)||(43318134-43318184)
chr5 (496-540)||(32089972-32090016)
[»] chr1 (1 HSPs)
chr1 (496-544)||(33679259-33679307)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 546
Target Start/End: Complemental strand, 4521024 - 4520492
Alignment:
Q  7 ttgaatgatgtttgaaataaactctcttaacacacatctcaacattctctcttccattagttgaacttcatatggatcttatcaaattatgttgatccat 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4521024 ttgaatgttgtttgaaataaactctcttaacacacatctcaacattcactcttccattagttgaacttcatatagatcttaccaaattatgttgatccat 4520925  T
Q  107 ataaatttgatgtgactcataacttttaagtaatagaagatggtatactaaaatgtgcgtaaaagagtatattgttagcactagtcaataatttttgctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  4520924 ataaatttgatgtgactcataacttttaagtaatagaagatggtatactaaaatgtgcgtaaaagagtatattgttagcactattcaatga-ttttgctc 4520826  T
Q  207 caactaatcttaaggattgtggcagatgtgttcaatttagaaaatggtacacctatagctagctactgcctcctacggactgagtttcaacaatcatgaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||     
T  4520825 caactaatcttaaggattgtggcagatgtgttcaatttagaaaatggtacaccta----tagctactgcctcctacggactgagtttcaacaatcatgag 4520730  T
Q  307 caaataattggtgcgtttaacatattcaaagatactaaaatgaccacctgacaataggttgtaatttcnnnnnnnnnnnnnngctgataattggtagtgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||    
T  4520729 caaataattggtgcgtttaacatattcaaagatactaaaatgaccacctgacaataggttgtaatttc-ttttttattttttgctgataattggtagtgt 4520631  T
Q  407 atatttttgggtgatgagtatgatatatgttaattcgagcatagttcacgtgtcggaggattcatattatttgattagaaataaaagaagagtgaatcat 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  4520630 atatttttgggtgatgagtatgatatatgttaattcgagcatagttca-gtgttggaggattcatatagtttgattagaaataaaagaagagtgaatcat 4520532  T
Q  507 caactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  4520531 caacttcgtccttgaatttttatgagtcggccaaattcat 4520492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 540
Target Start/End: Complemental strand, 2828503 - 2828458
Alignment:
Q  495 agagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||    
T  2828503 agagtgaatcatcaacttcgtccctgaatttttatgggtcggccaa 2828458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 35997858 - 35997810
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    |||||||||||||||||||||| |||||||| | | |||||||||||||    
T  35997858 gagtgaatcatcaactttgtccctgaattttcacgggtcggccaaattc 35997810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 44558617 - 44558567
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| ||||||||| ||||||||||||| | | |||||||||||||||    
T  44558617 gagtgaaccatcaacttcgtccttgaattttcacgggtcggccaaattcat 44558567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 528
Target Start/End: Original strand, 43778388 - 43778421
Alignment:
Q  495 agagtgaatcatcaactttgtccttgaattttta 528  Q
    |||||||||||||||||| |||||||||||||||    
T  43778388 agagtgaatcatcaacttcgtccttgaattttta 43778421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 42879275 - 42879319
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  42879275 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 42879319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 44992808 - 44992852
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  44992808 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 44992852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 46812708 - 46812656
Alignment:
Q  494 aagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||| ||||||||| ||||||||||||||| | |||||||||||||||    
T  46812708 aagagtgaaccatcaacttcgtccttgaatttttacgagtcggccaaattcat 46812656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 33037693 - 33037743
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||| ||||||||| || ||||||||||||||||| |||||||||||||||    
T  33037693 gagtcaatcatcaagttcgtccttgaatttttatgtgtcggccaaattcat 33037743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 33038921 - 33038871
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||||||||||| || ||||||||||||||||| ||||| |||||||||    
T  33038921 gagtgaatcatcaaattcgtccttgaatttttatgggtcggtcaaattcat 33038871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 38614883 - 38614833
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||||||||||  ||||||||||||||||| ||||| |||||||||    
T  38614883 gagtgaatcatcaactacgtccttgaatttttatgggtcggtcaaattcat 38614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 40785642 - 40785589
Alignment:
Q  493 gaagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||||||||||| || ||||||||||||| | | |||||||||||||||    
T  40785642 gaagagtgaatcatcaatttcgtccttgaattttcacgggtcggccaaattcat 40785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 528
Target Start/End: Complemental strand, 45465278 - 45465243
Alignment:
Q  493 gaagagtgaatcatcaactttgtccttgaattttta 528  Q
    |||||||||||||||||||| |||||||||||||||    
T  45465278 gaagagtgaatcatcaacttcgtccttgaattttta 45465243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 2168925 - 2168875
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||||||||||| |||||||||||||||   |||| ||||||||||    
T  2168925 gagtgaatcatcaacttcgtccttgaatttttactggtcgtccaaattcat 2168875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 30108565 - 30108609
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  30108565 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 30108609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 2143131 - 2143092
Alignment:
Q  434 tgttaattcgagcatagttcacgtgtcggaggattcatat 473  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  2143131 tgttgattcgagcatagttcacgtgtcggaggattcatat 2143092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 30639608 - 30639658
Alignment:
Q  493 gaagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaatt 543  Q
    |||||||||||||||||||| |||| |||||||| | | ||||||||||||    
T  30639608 gaagagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaatt 30639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 35174391 - 35174435
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  35174391 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 35174435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 537
Target Start/End: Original strand, 23887196 - 23887239
Alignment:
Q  494 aagagtgaatcatcaactttgtccttgaatttttatgcgtcggc 537  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  23887196 aagagtgaatcatcaacttcgtccttgaatttttatgggtcggc 23887239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 45897039 - 45897094
Alignment:
Q  485 aaataaaagaagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||| || ||||||||||||||||||| ||||||||||||||| | |||||||||    
T  45897039 aaatacaataagagtgaatcatcaacttcgtccttgaatttttacgggtcggccaa 45897094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 1847736 - 1847686
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||||||||||| |||||||||||||||| | | |||||||||||||||    
T  1847736 gagtgaatcatcaaatttgtccttgaattttcacgggtcggccaaattcat 1847686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 39641963 - 39641913
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| |||||| |||||||||||||||||| | |||||||||||||||    
T  39641963 gagtgaaccatcaaatttgtccttgaatttttacgggtcggccaaattcat 39641913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 2977453 - 2977403
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||||||||||| || ||||||||||||||| |  ||||||||||||||    
T  2977453 gagtgaatcatcaaattcgtccttgaatttttacgaatcggccaaattcat 2977403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 24383017 - 24382967
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| |||||| || ||||||||||||||| | |||||||||||||||    
T  24383017 gagtgaaccatcaaattggtccttgaatttttacgggtcggccaaattcat 24382967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 32822361 - 32822411
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| ||||||||| |||||||||||||||||  ||||||||||||||    
T  32822361 gagtgaaccatcaacttcgtccttgaatttttatggatcggccaaattcat 32822411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 461181 - 461226
Alignment:
Q  501 aatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||    
T  461181 aatcatcaacttcgtccttgaattttcacgggtcggccaaattcat 461226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 40019156 - 40019200
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| ||| ||||||||||| | |||||||||    
T  40019156 gagtgaatcatcaacttcgtctttgaatttttacgggtcggccaa 40019200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 544
Target Start/End: Complemental strand, 11315460 - 11315411
Alignment:
Q  495 agagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    |||||||||||||||||| |||||| ||||||||||  ||||||||||||    
T  11315460 agagtgaatcatcaacttcgtccttaaatttttatgaatcggccaaattc 11315411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 41245 - 41185
Alignment:
Q  484 gaaataaaagaagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    |||||| |||| ||||||||||||||||| |||| |||||||| | | |||||||||||||    
T  41245 gaaatataagatgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattc 41185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 361443 - 361495
Alignment:
Q  494 aagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||||||||||||| ||||||||||||| |||  ||||||||| ||||    
T  361443 aagagtgaatcatcaacttcgtccttgaattttcatgaatcggccaaaatcat 361495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 15432328 - 15432378
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| |||||| ||| |||||||||||||||| ||||| |||||||||    
T  15432328 gagtgaaccatcaaatttatccttgaatttttatgggtcggtcaaattcat 15432378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 25619661 - 25619710
Alignment:
Q  497 agtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    |||||| |||||| || ||||||||||||||||| ||||| |||||||||    
T  25619661 agtgaaccatcaaattcgtccttgaatttttatgggtcggtcaaattcat 25619710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Complemental strand, 42880903 - 42880854
Alignment:
Q  495 agagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    |||||||||||||||||| |||| |||||||||| | ||||| |||||||    
T  42880903 agagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaaattc 42880854  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 28248266 - 28248222
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  28248266 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 28248222  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 37417271 - 37417323
Alignment:
Q  494 aagagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||||| |||||  || ||||||||||||| ||| |||||||||||||||    
T  37417271 aagagtgaaccatcatattcgtccttgaattttcatgggtcggccaaattcat 37417323  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 37418860 - 37418812
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    ||||||||||||||||| || |||||||||| | | |||||||||||||    
T  37418860 gagtgaatcatcaacttcgtacttgaattttcacgggtcggccaaattc 37418812  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 38596868 - 38596916
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    ||||||| |||||| || ||||||||||||||||| |||||||||||||    
T  38596868 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattc 38596916  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 43318184 - 43318134
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattcat 546  Q
    ||||||| |||||| || ||||||||||||||||| |||||||||| ||||    
T  43318184 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaaatcat 43318134  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 32090016 - 32089972
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaa 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  32090016 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaa 32089972  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 33679259 - 33679307
Alignment:
Q  496 gagtgaatcatcaactttgtccttgaatttttatgcgtcggccaaattc 544  Q
    |||||||||||||| ||||||| |||||||||| | ||| |||||||||    
T  33679259 gagtgaatcatcaattttgtccatgaatttttacgggtcagccaaattc 33679307  T

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