View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16793_low_5 (Length: 555)
Name: NF16793_low_5
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_5 |
 | |
|
| [»] scaffold1333 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1333 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 2003 - 1474
Alignment:
| Q |
18 |
taatattctcaacctactatgaatcctagcgggaatttagtaaacgaatgcaaatgcaaaatagtgtattgttaacaagaagtggaagtaaaattccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2003 |
taatattctcaacctactatgaatcctagcgggaatttagtaaacgaatgcaaatgcaaaatagtgtattgttaacaagaagtggaagtaaaattccatc |
1904 |
T |
|
| Q |
118 |
attttgtaaatatgaactcgtccaagctttgcactttattaactattttactcgtaaagaattttagcttaattttacaatgtgcactgcatcaattatt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1903 |
attttgtaaatctgaactcgtccaagctttgcactttattaactattttactcgtaaagaattttagcttaattttacaatgtgcactgcatcaatcatt |
1804 |
T |
|
| Q |
218 |
ttattttataacattttttgagagactgtcaaatcctttacaagattcagcactagacagattcagctaaactctttgtatggtttgatggtttgatttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1803 |
ttattttataacattttttgagagactgtcaaatcctttgcaagtttcagcactagacagattcagctaaactctttgtatggtttgatggtttgatttt |
1704 |
T |
|
| Q |
318 |
tctctgagaaactttttgattccccaagtcttgattcttcttttgccaattttcttcattgaatttcatttcctccacttctctaatatagacttctctc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1703 |
tctctgagaaactttttgattccccaagtcttgattcttcttttgccaattttcttctttgaatttcatttcctccacttctctaatatagacttctctc |
1604 |
T |
|
| Q |
418 |
aagtattactaaatgtttaactcactcctcaaattaacatcctctgaagcaagttttttctttctgttctaagctgcaagcatacaattttggctcacat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1603 |
aagtattactaaatgtttaactcactcctcaaattaacatcctctaaagcaagttttttctttctgttctaagctgcaagcatagaattttggctcacat |
1504 |
T |
|
| Q |
518 |
tctttctctttttccttaagcttctctgct |
547 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
1503 |
tctctctctttttccttaagcttctctgct |
1474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 6243177 - 6243113
Alignment:
| Q |
18 |
taatattctcaacctactatgaatcctagcgggaatttagtaaacgaatgcaaatgcaaaatagt |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6243177 |
taatattctcaacctactatgaatcctagcgggaatttagtaaacgaatgcaaatgcaaaatagt |
6243113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University