View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16793_low_8 (Length: 488)

Name: NF16793_low_8
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16793_low_8
NF16793_low_8
[»] chr1 (8 HSPs)
chr1 (18-243)||(9487412-9487631)
chr1 (312-478)||(9487177-9487343)
chr1 (378-478)||(9457342-9457442)
chr1 (378-478)||(9461439-9461539)
chr1 (354-429)||(9434977-9435052)
chr1 (71-126)||(13046548-13046603)
chr1 (21-70)||(9457947-9457997)
chr1 (21-70)||(9462044-9462094)
[»] chr3 (2 HSPs)
chr3 (73-127)||(20302812-20302866)
chr3 (73-127)||(20327356-20327410)
[»] chr4 (2 HSPs)
chr4 (73-154)||(56074639-56074718)
chr4 (99-197)||(52545122-52545216)
[»] chr6 (1 HSPs)
chr6 (70-127)||(28884163-28884220)
[»] chr7 (1 HSPs)
chr7 (73-154)||(29597965-29598044)
[»] scaffold0057 (1 HSPs)
scaffold0057 (99-197)||(58903-58997)
[»] chr8 (5 HSPs)
chr8 (99-197)||(31032023-31032117)
chr8 (78-126)||(14939699-14939747)
chr8 (99-154)||(19473690-19473743)
chr8 (99-154)||(19544615-19544668)
chr8 (99-154)||(19588028-19588081)
[»] scaffold0006 (1 HSPs)
scaffold0006 (99-128)||(39327-39356)
[»] chr5 (1 HSPs)
chr5 (98-154)||(20012941-20012995)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 9487631 - 9487412
Alignment:
Q  18 ctcccatgcactcatgaatataaccttatttgtagcatgttcaattcaataattattatgaatcattgaattctagggaagaagatcatagtgatcagca 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9487631 ctcccatgcactcatgaatataaccttatttgtagcaagttcaattcaataattattatgaatcatcgaattctagggaagaagatcatagtgatcagca 9487532  T
Q  118 agaaagcaaaagcataagattattcatgtgagagatatatactcagagattcattgtagaatgaatagattgatcaaagaattatcaaatggtacaatag 217  Q
    |||||||  |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9487531 agaaagc--aagcataagattattcatgtgagag----atactcagagattcattgtagaatgaatagattgataaaagaattatcaaatggtacaatag 9487438  T
Q  218 agacttatttataggtgtacttggag 243  Q
    ||||||||||||||||||||||||||    
T  9487437 agacttatttataggtgtacttggag 9487412  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 312 - 478
Target Start/End: Complemental strand, 9487343 - 9487177
Alignment:
Q  312 gttgattaaccaggctgtaataacaatggcatatacgccacaaagagaatttataaaggctcggtatgcaaataattactatttttcagaaaacattatg 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9487343 gttgattaaccatgctgtaataacaatggcatatacgccacaaagagaatttataaaggctcggtatgcaaataattactatttttcagaaaacattatg 9487244  T
Q  412 caacaagcatcaaaatggaacgtaatatggaaaatgcaaatacttgctagaatcaaataattttcat 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9487243 caacaagcatcaaaatggaacgtaatatggaaaatgcaaatacttgctagaatcaaataattttcat 9487177  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 9457442 - 9457342
Alignment:
Q  378 tgcaaataattactatttttcagaaaacattatgcaacaagcatcaaaatggaacgtaatatggaaaatgcaaatacttgctagaatcaaataattttca 477  Q
    |||||||||||||| ||| |||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||| | |  |||| | ||||||||||||    
T  9457442 tgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaataattttca 9457343  T
Q  478 t 478  Q
    |    
T  9457342 t 9457342  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 9461539 - 9461439
Alignment:
Q  378 tgcaaataattactatttttcagaaaacattatgcaacaagcatcaaaatggaacgtaatatggaaaatgcaaatacttgctagaatcaaataattttca 477  Q
    |||||||||||||| ||| |||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||| | |  |||| | ||||||||||||    
T  9461539 tgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaataattttca 9461440  T
Q  478 t 478  Q
    |    
T  9461439 t 9461439  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 9435052 - 9434977
Alignment:
Q  354 aagagaatttataaaggctcggtatgcaaataattactatttttcagaaaacattatgcaacaagcatcaaaatgg 429  Q
    ||||||| ||||||||| || ||||||||||||||||||||||| || ||||| ||  |||||||||| |||||||    
T  9435052 aagagaacttataaaggttctgtatgcaaataattactattttttagcaaacaatagtcaacaagcatgaaaatgg 9434977  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 13046603 - 13046548
Alignment:
Q  71 tattatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaa 126  Q
    ||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||    
T  13046603 tattatgaatcatggtattatagggaagaagatcataatgatcagtaagaaagcaa 13046548  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 9457997 - 9457947
Alignment:
Q  21 ccatgcactcatgaatataaccttatttgtagcatg-ttcaattcaataat 70  Q
    |||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  9457997 ccatgcactcatgaatataaccttatttgtagaatgtttaaattcaataat 9457947  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 9462094 - 9462044
Alignment:
Q  21 ccatgcactcatgaatataaccttatttgtagcatg-ttcaattcaataat 70  Q
    |||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  9462094 ccatgcactcatgaatataaccttatttgtagaatgtttaaattcaataat 9462044  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 20302866 - 20302812
Alignment:
Q  73 ttatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaaa 127  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  20302866 ttatgaatcatggaattgtagggaagaagatcataatgatcagcaagaaagcaaa 20302812  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 20327410 - 20327356
Alignment:
Q  73 ttatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaaa 127  Q
    ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||    
T  20327410 ttatgaatcatggaattgtagggaagaagatcatcatgatcagcaagaaagcaaa 20327356  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 56074639 - 56074718
Alignment:
Q  73 ttatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||| ||||  ||||||||||| ||||| ||||||||||||||||  |||||||||| || ||||||| ||||||    
T  56074639 ttatgaatcatggaatcatagggaagaaggtcataatgatcagcaagaaagc--aagcataagagtactcatgtgggagata 56074718  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 52545122 - 52545216
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagatatatactc--agagattcattgtagaatgaatagattgatcaaag 196  Q
    ||||||||||||||||||||||||||   ||||||||| || ||||||| |||    ||||||  ||| | ||||| |||||||||||||||||| ||||    
T  52545122 aagatcatagtgatcagcaagaaagc--gagcataagagtactcatgtgggag----atactcatagaaactcattatagaatgaatagattgataaaag 52545215  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 28884163 - 28884220
Alignment:
Q  70 ttattatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaaa 127  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||    
T  28884163 ttattatgaatcatggaattatagggaagaaggtcataatgatcagccagaaagcaaa 28884220  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 29597965 - 29598044
Alignment:
Q  73 ttatgaatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||| |||| | |||||  ||| |||||||||||||||||||||  | ||||||||| |||||||||| ||||||    
T  29597965 ttatgaatcatggaatcccagggataaaggtcatagtgatcagcaagaaag--agagcataagagtattcatgtgggagata 29598044  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 58997 - 58903
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagatatatactc--agagattcattgtagaatgaatagattgatcaaag 196  Q
    ||||||||||||||||||||||||||  |||||||||| || ||||||| |||    ||||||  ||| | ||||| |||||||||||||||||| ||||    
T  58997 aagatcatagtgatcagcaagaaagc--aagcataagagtactcatgtgggag----atactcatagaaactcattatagaatgaatagattgataaaag 58904  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 31032023 - 31032117
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagatatatactc--agagattcattgtagaatgaatagattgatcaaag 196  Q
    ||||||||||||||||||||||||||  |||||||||| || ||||||| |||    ||||||  ||| | ||||| |||||||||||||||||| ||||    
T  31032023 aagatcatagtgatcagcaagaaagc--aagcataagagtactcatgtgggag----atactcatagaaactcattatagaatgaatagattgataaaag 31032116  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 14939747 - 14939699
Alignment:
Q  78 aatcattgaattctagggaagaagatcatagtgatcagcaagaaagcaa 126  Q
    |||||| |||| ||| |||  ||||||||||||||||||||||||||||    
T  14939747 aatcatggaatcctaaggataaagatcatagtgatcagcaagaaagcaa 14939699  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 19473743 - 19473690
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||||||||||||||||||  ||| |||||| || ||||||| ||||||    
T  19473743 aagatcatagtgatcagcaagaaagc--aagaataagagtactcatgtgggagata 19473690  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 19544668 - 19544615
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||||||||||||||||||  ||| |||||| || ||||||| ||||||    
T  19544668 aagatcatagtgatcagcaagaaagc--aagaataagagtactcatgtgggagata 19544615  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 19588028 - 19588081
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||||||||||||||||||  ||| |||||| || ||||||| ||||||    
T  19588028 aagatcatagtgatcagcaagaaagc--aagaataagagtactcatgtgggagata 19588081  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 39356 - 39327
Alignment:
Q  99 aagatcatagtgatcagcaagaaagcaaaa 128  Q
    ||||||||||||||||||||||||||||||    
T  39356 aagatcatagtgatcagcaagaaagcaaaa 39327  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 20012941 - 20012995
Alignment:
Q  98 gaagatcatagtgatcagcaagaaagcaaaagcataagattattcatgtgagagata 154  Q
    ||||||||||||||||| |||||||||  |||||||||| || ||||||| ||||||    
T  20012941 gaagatcatagtgatcaccaagaaagc--aagcataagagtactcatgtgggagata 20012995  T

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