View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16793_low_9 (Length: 480)
Name: NF16793_low_9
Description: NF16793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16793_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 31776963 - 31777412
Alignment:
| Q |
12 |
aagaagttgacttatattttaaggacgtgaacgtcttagatgagtgatttgtaagtatctttgttagcgttcgttgagccttaaaatccgtcgtgacttt |
111 |
Q |
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| T |
31776963 |
aagaagttgacttatattttaaggacgtgaacatcttagatgaatgatttgtaagtatctttgttagcgttcgttgaaccttaaaatccgtcctaacttt |
31777062 |
T |
|
| Q |
112 |
gatgagctacttagactcataatcacatatactttgtatatatattgctcaaaccataatcgaaagtaagattaagacatataaagtgtatatttgaatc |
211 |
Q |
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| T |
31777063 |
gatgaactacttagact---actcacatatactttctatatatattgctcaaaccataatcgaaagtaaggttatgacatataaagtgtatatttgaatc |
31777159 |
T |
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| Q |
212 |
cacaaatttccacctttgtatatttttgtgcaactttcaccgctaaacaaacggtt-nnnnnnngtactccacctcgttcaaaggaagcactccgtggca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
31777160 |
cacaaatttccacctttgtatatttttgtgcaactttcaccgctaaacaaacagttaaaaaaaagtactccacctcgttcaaaggaagcactccgtggca |
31777259 |
T |
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| Q |
311 |
aagggtagaaaactttgggtttggcgccatagattaaccacctcgttcaaaggaggagaaaactg-nnnnnnnncccttatctttttccatttccaattc |
409 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
31777260 |
aagggtagaaaaatttgggtttggcgccatagattaaccacctcgttcaaaggaggagaaaactgaaaaaaaaacccttttctttttccatttccaattc |
31777359 |
T |
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| Q |
410 |
caaaatctggtccatagtgttgaatgattccatggctccgaaatccaaatccc |
462 |
Q |
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| T |
31777360 |
caaaatctggtccatagtgttgaatgattccatggctccgaaatccaaatccc |
31777412 |
T |
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